miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
774 3' -48.2 NC_000852.3 + 102805 1.14 0.017874
Target:  5'- cACAAACCCACUCUAACAGCGGAAACCg -3'
miRNA:   3'- -UGUUUGGGUGAGAUUGUCGCCUUUGG- -5'
774 3' -48.2 NC_000852.3 + 16562 0.76 0.946357
Target:  5'- aACGuaccGCCUACUCUGAgGGCGGAuGCg -3'
miRNA:   3'- -UGUu---UGGGUGAGAUUgUCGCCUuUGg -5'
774 3' -48.2 NC_000852.3 + 291691 0.74 0.976774
Target:  5'- -aGAACCCGCUUUAGCGGCG--AGCUu -3'
miRNA:   3'- ugUUUGGGUGAGAUUGUCGCcuUUGG- -5'
774 3' -48.2 NC_000852.3 + 198131 0.71 0.99722
Target:  5'- -aGAACCUAUUCUAcCAGUuaaGGAAGCUa -3'
miRNA:   3'- ugUUUGGGUGAGAUuGUCG---CCUUUGG- -5'
774 3' -48.2 NC_000852.3 + 155892 0.71 0.99722
Target:  5'- uGCAaaAAUCC-CUUUGucuAUAGCGGGGACCg -3'
miRNA:   3'- -UGU--UUGGGuGAGAU---UGUCGCCUUUGG- -5'
774 3' -48.2 NC_000852.3 + 45919 0.7 0.999051
Target:  5'- uGCAAAgCCGCggaugCUGucguUGGCGGAAAUCg -3'
miRNA:   3'- -UGUUUgGGUGa----GAUu---GUCGCCUUUGG- -5'
774 3' -48.2 NC_000852.3 + 141051 0.69 0.999584
Target:  5'- -gAAACCC-CUCguuuCAGCGGGAuauuuauaaACCa -3'
miRNA:   3'- ugUUUGGGuGAGauu-GUCGCCUU---------UGG- -5'
774 3' -48.2 NC_000852.3 + 185993 0.69 0.999666
Target:  5'- gACAAACUCACUgCgaacucauacACAGCGGGGAUUu -3'
miRNA:   3'- -UGUUUGGGUGA-Gau--------UGUCGCCUUUGG- -5'
774 3' -48.2 NC_000852.3 + 145816 0.69 0.999666
Target:  5'- cACAAACaauagaaauaCCACggacguCGGCGGggGCCg -3'
miRNA:   3'- -UGUUUG----------GGUGagauu-GUCGCCuuUGG- -5'
774 3' -48.2 NC_000852.3 + 52856 0.69 0.999734
Target:  5'- ---uGCUCACUC--GCGGUGGAGcACCa -3'
miRNA:   3'- uguuUGGGUGAGauUGUCGCCUU-UGG- -5'
774 3' -48.2 NC_000852.3 + 209249 0.69 0.999734
Target:  5'- uAUAAAUUUAgUUUUGACAGCGGAAuuaGCCa -3'
miRNA:   3'- -UGUUUGGGU-GAGAUUGUCGCCUU---UGG- -5'
774 3' -48.2 NC_000852.3 + 308760 0.68 0.99987
Target:  5'- gACGAucACCUGCUCUAc--GCGGAA-CCg -3'
miRNA:   3'- -UGUU--UGGGUGAGAUuguCGCCUUuGG- -5'
774 3' -48.2 NC_000852.3 + 50419 0.68 0.9999
Target:  5'- uCAAACCCAgccuuuggUUCaAACGGCGGAggUUc -3'
miRNA:   3'- uGUUUGGGU--------GAGaUUGUCGCCUuuGG- -5'
774 3' -48.2 NC_000852.3 + 303997 0.68 0.999923
Target:  5'- ---uGCCCAguugUCUAaacAUGGCGGAGGCCu -3'
miRNA:   3'- uguuUGGGUg---AGAU---UGUCGCCUUUGG- -5'
774 3' -48.2 NC_000852.3 + 39625 0.68 0.999923
Target:  5'- -aAAACCaCGCUCUGAUAuuCGGuAGCCg -3'
miRNA:   3'- ugUUUGG-GUGAGAUUGUc-GCCuUUGG- -5'
774 3' -48.2 NC_000852.3 + 194997 0.68 0.999923
Target:  5'- -gGAACCCAUguauuCAGUGGGGACa -3'
miRNA:   3'- ugUUUGGGUGagauuGUCGCCUUUGg -5'
774 3' -48.2 NC_000852.3 + 302494 0.67 0.999941
Target:  5'- uACAAugguuggaCUGCUC--GCAGUGGAGACCc -3'
miRNA:   3'- -UGUUug------GGUGAGauUGUCGCCUUUGG- -5'
774 3' -48.2 NC_000852.3 + 168545 0.67 0.999941
Target:  5'- cACAAACCa--UCUGGCcacaccauAGCGGGAccGCCc -3'
miRNA:   3'- -UGUUUGGgugAGAUUG--------UCGCCUU--UGG- -5'
774 3' -48.2 NC_000852.3 + 197241 0.67 0.999947
Target:  5'- -gAAACCCGCUCcGAaaccugcgccgacgcCAGCGccGAAACCc -3'
miRNA:   3'- ugUUUGGGUGAGaUU---------------GUCGC--CUUUGG- -5'
774 3' -48.2 NC_000852.3 + 320076 0.67 0.999955
Target:  5'- gGCAAGCCCGCg--GACgaguAGCGGGGu-- -3'
miRNA:   3'- -UGUUUGGGUGagaUUG----UCGCCUUugg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.