Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
774 | 3' | -48.2 | NC_000852.3 | + | 303997 | 0.68 | 0.999923 |
Target: 5'- ---uGCCCAguugUCUAaacAUGGCGGAGGCCu -3' miRNA: 3'- uguuUGGGUg---AGAU---UGUCGCCUUUGG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 102805 | 1.14 | 0.017874 |
Target: 5'- cACAAACCCACUCUAACAGCGGAAACCg -3' miRNA: 3'- -UGUUUGGGUGAGAUUGUCGCCUUUGG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 291691 | 0.74 | 0.976774 |
Target: 5'- -aGAACCCGCUUUAGCGGCG--AGCUu -3' miRNA: 3'- ugUUUGGGUGAGAUUGUCGCcuUUGG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 198131 | 0.71 | 0.99722 |
Target: 5'- -aGAACCUAUUCUAcCAGUuaaGGAAGCUa -3' miRNA: 3'- ugUUUGGGUGAGAUuGUCG---CCUUUGG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 45919 | 0.7 | 0.999051 |
Target: 5'- uGCAAAgCCGCggaugCUGucguUGGCGGAAAUCg -3' miRNA: 3'- -UGUUUgGGUGa----GAUu---GUCGCCUUUGG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 185993 | 0.69 | 0.999666 |
Target: 5'- gACAAACUCACUgCgaacucauacACAGCGGGGAUUu -3' miRNA: 3'- -UGUUUGGGUGA-Gau--------UGUCGCCUUUGG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 52856 | 0.69 | 0.999734 |
Target: 5'- ---uGCUCACUC--GCGGUGGAGcACCa -3' miRNA: 3'- uguuUGGGUGAGauUGUCGCCUU-UGG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 209249 | 0.69 | 0.999734 |
Target: 5'- uAUAAAUUUAgUUUUGACAGCGGAAuuaGCCa -3' miRNA: 3'- -UGUUUGGGU-GAGAUUGUCGCCUU---UGG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 50419 | 0.68 | 0.9999 |
Target: 5'- uCAAACCCAgccuuuggUUCaAACGGCGGAggUUc -3' miRNA: 3'- uGUUUGGGU--------GAGaUUGUCGCCUuuGG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 328999 | 0.66 | 0.999993 |
Target: 5'- -gGAGCCCAUguUCgaccAGgAGCGGAGcCCa -3' miRNA: 3'- ugUUUGGGUG--AGa---UUgUCGCCUUuGG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 87178 | 0.67 | 0.999979 |
Target: 5'- cGCuGACgUAUUCgucauucggaguaauACGGCGGGAACCg -3' miRNA: 3'- -UGuUUGgGUGAGau-------------UGUCGCCUUUGG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 211109 | 0.67 | 0.999966 |
Target: 5'- gGCGAAgUUGgUgUAACGGCGGuAAACCg -3' miRNA: 3'- -UGUUUgGGUgAgAUUGUCGCC-UUUGG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 39625 | 0.68 | 0.999923 |
Target: 5'- -aAAACCaCGCUCUGAUAuuCGGuAGCCg -3' miRNA: 3'- ugUUUGG-GUGAGAUUGUc-GCCuUUGG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 328949 | 0.66 | 0.999986 |
Target: 5'- gACAAGCCC-Cg-UAGCguAGCGGAGugUa -3' miRNA: 3'- -UGUUUGGGuGagAUUG--UCGCCUUugG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 168545 | 0.67 | 0.999941 |
Target: 5'- cACAAACCa--UCUGGCcacaccauAGCGGGAccGCCc -3' miRNA: 3'- -UGUUUGGgugAGAUUG--------UCGCCUU--UGG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 320076 | 0.67 | 0.999955 |
Target: 5'- gGCAAGCCCGCg--GACgaguAGCGGGGu-- -3' miRNA: 3'- -UGUUUGGGUGagaUUG----UCGCCUUugg -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 150797 | 0.66 | 0.999993 |
Target: 5'- ----cCCUACUUUGGCAGCGGcGAg- -3' miRNA: 3'- uguuuGGGUGAGAUUGUCGCCuUUgg -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 302494 | 0.67 | 0.999941 |
Target: 5'- uACAAugguuggaCUGCUC--GCAGUGGAGACCc -3' miRNA: 3'- -UGUUug------GGUGAGauUGUCGCCUUUGG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 197241 | 0.67 | 0.999947 |
Target: 5'- -gAAACCCGCUCcGAaaccugcgccgacgcCAGCGccGAAACCc -3' miRNA: 3'- ugUUUGGGUGAGaUU---------------GUCGC--CUUUGG- -5' |
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774 | 3' | -48.2 | NC_000852.3 | + | 194997 | 0.68 | 0.999923 |
Target: 5'- -gGAACCCAUguauuCAGUGGGGACa -3' miRNA: 3'- ugUUUGGGUGagauuGUCGCCUUUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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