miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7744 5' -56.9 NC_001973.1 + 159680 0.66 0.885919
Target:  5'- gACAGcCGCCGCCUcGcuuAGCCAG-GCu -3'
miRNA:   3'- -UGUC-GCGGCGGAcCuacUUGGUCaCG- -5'
7744 5' -56.9 NC_001973.1 + 115088 0.66 0.885919
Target:  5'- uCGGCGuCCGCCgaGGcgcgaugucUGAGCCGG-GCg -3'
miRNA:   3'- uGUCGC-GGCGGa-CCu--------ACUUGGUCaCG- -5'
7744 5' -56.9 NC_001973.1 + 14607 0.66 0.871737
Target:  5'- cGCGGUgGCCGCCcGGcUG--UCGGUGCg -3'
miRNA:   3'- -UGUCG-CGGCGGaCCuACuuGGUCACG- -5'
7744 5' -56.9 NC_001973.1 + 54524 0.66 0.871737
Target:  5'- aACAGCGgguccuCCGCCUcGAUGGGCguGaGCu -3'
miRNA:   3'- -UGUCGC------GGCGGAcCUACUUGguCaCG- -5'
7744 5' -56.9 NC_001973.1 + 94699 0.66 0.864324
Target:  5'- uCGGCGaUCGCCaggugUGGGUGGGCgAG-GCg -3'
miRNA:   3'- uGUCGC-GGCGG-----ACCUACUUGgUCaCG- -5'
7744 5' -56.9 NC_001973.1 + 133656 0.66 0.856702
Target:  5'- -gAGCaGCCGCCguuGAUGAGCgAGcGCc -3'
miRNA:   3'- ugUCG-CGGCGGac-CUACUUGgUCaCG- -5'
7744 5' -56.9 NC_001973.1 + 104269 0.67 0.832652
Target:  5'- gGCGGCGCCGCCgcc--GGGCUGGUcGUg -3'
miRNA:   3'- -UGUCGCGGCGGaccuaCUUGGUCA-CG- -5'
7744 5' -56.9 NC_001973.1 + 117636 0.67 0.832652
Target:  5'- uGCGGCGCCGCC------GACCAGcagGCg -3'
miRNA:   3'- -UGUCGCGGCGGaccuacUUGGUCa--CG- -5'
7744 5' -56.9 NC_001973.1 + 42026 0.67 0.8157
Target:  5'- gGCgAGCGUCGaCCUGGccgagGUGAGCgCGG-GCa -3'
miRNA:   3'- -UG-UCGCGGC-GGACC-----UACUUG-GUCaCG- -5'
7744 5' -56.9 NC_001973.1 + 66624 0.67 0.8157
Target:  5'- -aAGgGCUauuacgaggGCCUGG-UGAcGCCGGUGCg -3'
miRNA:   3'- ugUCgCGG---------CGGACCuACU-UGGUCACG- -5'
7744 5' -56.9 NC_001973.1 + 63807 0.67 0.814835
Target:  5'- cGCAGCaaccgacGCgGCCUGGGc-AACgAGUGCg -3'
miRNA:   3'- -UGUCG-------CGgCGGACCUacUUGgUCACG- -5'
7744 5' -56.9 NC_001973.1 + 58777 0.68 0.78905
Target:  5'- cCGGCG-CGCCgUGG-UGAACCugagcGUGCg -3'
miRNA:   3'- uGUCGCgGCGG-ACCuACUUGGu----CACG- -5'
7744 5' -56.9 NC_001973.1 + 7844 0.68 0.78905
Target:  5'- gGCGGCGCCGCgcccgucgagCUGGcgc-GCCAGgGCg -3'
miRNA:   3'- -UGUCGCGGCG----------GACCuacuUGGUCaCG- -5'
7744 5' -56.9 NC_001973.1 + 83730 0.68 0.751593
Target:  5'- aGCGGCGCCGCguccgcgacUUGGAggugGAGCUGGaccGCg -3'
miRNA:   3'- -UGUCGCGGCG---------GACCUa---CUUGGUCa--CG- -5'
7744 5' -56.9 NC_001973.1 + 31735 0.69 0.741945
Target:  5'- gACAGCaG-CGCC-GGGUGGGCC-GUGCc -3'
miRNA:   3'- -UGUCG-CgGCGGaCCUACUUGGuCACG- -5'
7744 5' -56.9 NC_001973.1 + 133966 0.69 0.732201
Target:  5'- gACGGcCGUcuccgaCGUCUGGGUGuAGCCGGUGg -3'
miRNA:   3'- -UGUC-GCG------GCGGACCUAC-UUGGUCACg -5'
7744 5' -56.9 NC_001973.1 + 134014 0.69 0.732201
Target:  5'- cACGGUGcCCGUCUcGGUGAACgGGUaGCa -3'
miRNA:   3'- -UGUCGC-GGCGGAcCUACUUGgUCA-CG- -5'
7744 5' -56.9 NC_001973.1 + 128422 0.69 0.722371
Target:  5'- cACGGCGCCucccuGCCuUGGuUGGugGCCGcGUGCa -3'
miRNA:   3'- -UGUCGCGG-----CGG-ACCuACU--UGGU-CACG- -5'
7744 5' -56.9 NC_001973.1 + 134178 0.7 0.682371
Target:  5'- uGCuGCGCCaGCg-GGGUauaaaggcGAGCCGGUGCa -3'
miRNA:   3'- -UGuCGCGG-CGgaCCUA--------CUUGGUCACG- -5'
7744 5' -56.9 NC_001973.1 + 83497 0.7 0.662088
Target:  5'- gACGGCGCUGgaCCaaaGGAUGAGCCGGcucGCc -3'
miRNA:   3'- -UGUCGCGGC--GGa--CCUACUUGGUCa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.