miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7745 3' -56.6 NC_001973.1 + 81636 0.66 0.914427
Target:  5'- cUugGuCGCGCG-CGCCGCUUCgGcCGGc -3'
miRNA:   3'- -AugC-GCGUGUaGUGGUGGAGgCuGCC- -5'
7745 3' -56.6 NC_001973.1 + 70146 0.66 0.914427
Target:  5'- gUGCGCaGCGCGU--CCGCgUCCG-CGGc -3'
miRNA:   3'- -AUGCG-CGUGUAguGGUGgAGGCuGCC- -5'
7745 3' -56.6 NC_001973.1 + 32543 0.66 0.914427
Target:  5'- cGCGaGCucgGCgAUCGCCGCCgCCGACGc -3'
miRNA:   3'- aUGCgCG---UG-UAGUGGUGGaGGCUGCc -5'
7745 3' -56.6 NC_001973.1 + 6998 0.66 0.914427
Target:  5'- aACGcCGC-CAUgACUuucgGCCUCCGACa- -3'
miRNA:   3'- aUGC-GCGuGUAgUGG----UGGAGGCUGcc -5'
7745 3' -56.6 NC_001973.1 + 17273 0.66 0.912685
Target:  5'- -cCGCGCACucgggcaucgcgucGUaCGCCGCCUcCCGGCc- -3'
miRNA:   3'- auGCGCGUG--------------UA-GUGGUGGA-GGCUGcc -5'
7745 3' -56.6 NC_001973.1 + 68031 0.66 0.908537
Target:  5'- cGCGuCGCGCggCACCACCaCC-ACGa -3'
miRNA:   3'- aUGC-GCGUGuaGUGGUGGaGGcUGCc -5'
7745 3' -56.6 NC_001973.1 + 132050 0.66 0.908537
Target:  5'- cACGCGUuuaggCACaCGCCcaCCGACGGc -3'
miRNA:   3'- aUGCGCGugua-GUG-GUGGa-GGCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 38328 0.66 0.908537
Target:  5'- -cUGCGCcaacauggcgGCGUCAgUGCCgCCGGCGGc -3'
miRNA:   3'- auGCGCG----------UGUAGUgGUGGaGGCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 50443 0.66 0.908537
Target:  5'- aGCGCGUucaccgcgaacuGCGucaucgucauguUCGCCGCCUCgGACa- -3'
miRNA:   3'- aUGCGCG------------UGU------------AGUGGUGGAGgCUGcc -5'
7745 3' -56.6 NC_001973.1 + 81883 0.66 0.908537
Target:  5'- aUAUGCGCGUGUCgGCCGCgUcCCGACGc -3'
miRNA:   3'- -AUGCGCGUGUAG-UGGUGgA-GGCUGCc -5'
7745 3' -56.6 NC_001973.1 + 79715 0.66 0.902418
Target:  5'- gGCGCGuCGgGUCGgCACCaa-GACGGg -3'
miRNA:   3'- aUGCGC-GUgUAGUgGUGGaggCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 95889 0.66 0.902418
Target:  5'- -cCGCGaGCugcgCGCCGCCaUCGACGGc -3'
miRNA:   3'- auGCGCgUGua--GUGGUGGaGGCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 23268 0.66 0.902418
Target:  5'- cGC-CGCGCG-CGCUugC-CCGGCGGc -3'
miRNA:   3'- aUGcGCGUGUaGUGGugGaGGCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 32367 0.66 0.902418
Target:  5'- aGCGUGUGCAUgCACgUGCCgaaaUCGACGGg -3'
miRNA:   3'- aUGCGCGUGUA-GUG-GUGGa---GGCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 96724 0.66 0.901793
Target:  5'- cGCGCGUAUcgCACCguguacgcgaaauACCggagcgCCGGCGa -3'
miRNA:   3'- aUGCGCGUGuaGUGG-------------UGGa-----GGCUGCc -5'
7745 3' -56.6 NC_001973.1 + 77373 0.66 0.896071
Target:  5'- cGCGCGCccGCG-CGCCGgCgCCGACGu -3'
miRNA:   3'- aUGCGCG--UGUaGUGGUgGaGGCUGCc -5'
7745 3' -56.6 NC_001973.1 + 71760 0.66 0.896071
Target:  5'- -cCGCGCcggGCccCGCCGCCgagcucgaggCCGGCGGc -3'
miRNA:   3'- auGCGCG---UGuaGUGGUGGa---------GGCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 64646 0.66 0.896071
Target:  5'- aAgGCGCACGagGCCGCCUUgaaaCGAUGc -3'
miRNA:   3'- aUgCGCGUGUagUGGUGGAG----GCUGCc -5'
7745 3' -56.6 NC_001973.1 + 51677 0.66 0.896071
Target:  5'- gGCGCGCGCG-CGCgAUCUCCucGACc- -3'
miRNA:   3'- aUGCGCGUGUaGUGgUGGAGG--CUGcc -5'
7745 3' -56.6 NC_001973.1 + 36299 0.66 0.896071
Target:  5'- aGCGCGCcuacaACAcgggCGCCGCggCCGACGcGg -3'
miRNA:   3'- aUGCGCG-----UGUa---GUGGUGgaGGCUGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.