Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7749 | 5' | -51.8 | NC_001973.1 | + | 160729 | 0.81 | 0.380314 |
Target: 5'- cGCCgGCaAGGGUCAAUcGGGUUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 160651 | 0.98 | 0.037975 |
Target: 5'- cGUCgGCUAGGGUCAACAGAGUUCAAGc -3' miRNA: 3'- -CGGgCGAUCCCAGUUGUCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 160572 | 0.86 | 0.214191 |
Target: 5'- cGUCgGCUAGGGUCGAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGAUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 160494 | 0.78 | 0.500335 |
Target: 5'- uGCCgGCcAGGGUCGAUGGAGgUCGAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGUCUCaAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 151096 | 0.69 | 0.944728 |
Target: 5'- cGCCCGCcGGGGUCGuuuGAGgUUAAa -3' miRNA: 3'- -CGGGCGaUCCCAGUuguCUCaAGUUc -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 151023 | 0.67 | 0.977352 |
Target: 5'- uGCCUGCUguccggcucggccgaAGGGUCAuuGCAG-GUcagacUCGAGc -3' miRNA: 3'- -CGGGCGA---------------UCCCAGU--UGUCuCA-----AGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 150929 | 0.72 | 0.848347 |
Target: 5'- cGUCCGCcGGGGUCGuuGGAGgUCAGa -3' miRNA: 3'- -CGGGCGaUCCCAGUugUCUCaAGUUc -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 146508 | 0.71 | 0.871905 |
Target: 5'- gGCCCGCgggaucgucGGG-CAGCAGAGggUCGAa -3' miRNA: 3'- -CGGGCGau-------CCCaGUUGUCUCa-AGUUc -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 146020 | 0.68 | 0.957347 |
Target: 5'- cGCCgGCUcgagcgcGGGUCGACGGAcgGggCGAGu -3' miRNA: 3'- -CGGgCGAu------CCCAGUUGUCU--CaaGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 130903 | 0.86 | 0.214191 |
Target: 5'- cGUCgGCUAGGGUCGAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGAUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 130805 | 0.76 | 0.613281 |
Target: 5'- cGUCgGCcGGGGUCGAUcGAGUUCGAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 130727 | 0.69 | 0.935084 |
Target: 5'- cGUCgGCcGGGG-CAAUcGAGUUCAAGa -3' miRNA: 3'- -CGGgCGaUCCCaGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 130648 | 0.78 | 0.53042 |
Target: 5'- uGCCgGCaAGGGUCAAUcGAGUUUAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 130570 | 0.74 | 0.747778 |
Target: 5'- cGUCgGCcGGGGUCGAUcGAGUUCAAa -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUc -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 129333 | 0.82 | 0.331786 |
Target: 5'- cGCCgGCaAGGGUCGAUAGAGgUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGUCUCaAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 129256 | 0.7 | 0.906574 |
Target: 5'- cGUCgGCaAGGGUCAuCGG-GUUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUuGUCuCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 129177 | 0.8 | 0.424224 |
Target: 5'- cGUCgGCaAGGGUCAAUGGAGUUCAAa -3' miRNA: 3'- -CGGgCGaUCCCAGUUGUCUCAAGUUc -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 128948 | 0.75 | 0.676234 |
Target: 5'- cGCCgGCUAGGGUCGAU-GAGaUCAu- -3' miRNA: 3'- -CGGgCGAUCCCAGUUGuCUCaAGUuc -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 127542 | 0.79 | 0.471028 |
Target: 5'- uGCCgGCaAGGGUCGAUGGAGgUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGUCUCaAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 127464 | 0.79 | 0.471028 |
Target: 5'- uGCCgGCaAGGGUCAAUcGAGUUCAAa -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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