miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7763 3' -56.5 NC_001973.1 + 121497 0.66 0.91155
Target:  5'- aGCCGccAGCGCGAaGUCGUuCAGcGCGAa -3'
miRNA:   3'- -CGGC--UCGUGUUcUAGCGcGUC-CGCUc -5'
7763 3' -56.5 NC_001973.1 + 35407 0.66 0.91155
Target:  5'- cGCCGcGCGCAAGucuuUCGCGCucgacGCGc- -3'
miRNA:   3'- -CGGCuCGUGUUCu---AGCGCGuc---CGCuc -5'
7763 3' -56.5 NC_001973.1 + 122674 0.66 0.91155
Target:  5'- cGUCGGGC-C-AGAaCGCGC-GGCGAu -3'
miRNA:   3'- -CGGCUCGuGuUCUaGCGCGuCCGCUc -5'
7763 3' -56.5 NC_001973.1 + 87102 0.66 0.91155
Target:  5'- uGCCG-GCACGuguGcgCGUGCGcGGCGuGc -3'
miRNA:   3'- -CGGCuCGUGUu--CuaGCGCGU-CCGCuC- -5'
7763 3' -56.5 NC_001973.1 + 160494 0.66 0.905508
Target:  5'- uGCCG-GC-CAGGGUCGaUGgAGGuCGAGc -3'
miRNA:   3'- -CGGCuCGuGUUCUAGC-GCgUCC-GCUC- -5'
7763 3' -56.5 NC_001973.1 + 59475 0.66 0.905508
Target:  5'- aGCUGAGCAgAAcGUCgGCGguGGCcaaGAGc -3'
miRNA:   3'- -CGGCUCGUgUUcUAG-CGCguCCG---CUC- -5'
7763 3' -56.5 NC_001973.1 + 159049 0.66 0.905508
Target:  5'- cGUCGAGCugGucGGA-CGCGgAGGaCGAc -3'
miRNA:   3'- -CGGCUCGugU--UCUaGCGCgUCC-GCUc -5'
7763 3' -56.5 NC_001973.1 + 5783 0.66 0.899234
Target:  5'- cGCCGuGgACGAaAUaaaCGCGgAGGCGAGc -3'
miRNA:   3'- -CGGCuCgUGUUcUA---GCGCgUCCGCUC- -5'
7763 3' -56.5 NC_001973.1 + 22464 0.66 0.898594
Target:  5'- uUCGAGCGCAacgGGAUCgugaauuGCGCucGGaCGAGg -3'
miRNA:   3'- cGGCUCGUGU---UCUAG-------CGCGu-CC-GCUC- -5'
7763 3' -56.5 NC_001973.1 + 59981 0.66 0.892732
Target:  5'- cGCCGGGC-CcAGAcCGCGgCcGGCGAc -3'
miRNA:   3'- -CGGCUCGuGuUCUaGCGC-GuCCGCUc -5'
7763 3' -56.5 NC_001973.1 + 81098 0.66 0.892732
Target:  5'- cGCUGGGCGCGGGcUCGUugaAGGCGc- -3'
miRNA:   3'- -CGGCUCGUGUUCuAGCGcg-UCCGCuc -5'
7763 3' -56.5 NC_001973.1 + 128093 0.66 0.886005
Target:  5'- -gCGGGCGCAGGAaCGCGUAcugguccccgccGaGCGAGc -3'
miRNA:   3'- cgGCUCGUGUUCUaGCGCGU------------C-CGCUC- -5'
7763 3' -56.5 NC_001973.1 + 53406 0.66 0.886005
Target:  5'- cGCCG-GCACGGGcggaGCGCcGGGCGc- -3'
miRNA:   3'- -CGGCuCGUGUUCuag-CGCG-UCCGCuc -5'
7763 3' -56.5 NC_001973.1 + 71947 0.66 0.886005
Target:  5'- gGCgGAcGCGUAAGAUcuuaCGCGUcGGCGAGg -3'
miRNA:   3'- -CGgCU-CGUGUUCUA----GCGCGuCCGCUC- -5'
7763 3' -56.5 NC_001973.1 + 72034 0.66 0.886005
Target:  5'- gGCgGAcGCGUAAGAUuuuaCGCGUcGGCGAGg -3'
miRNA:   3'- -CGgCU-CGUGUUCUA----GCGCGuCCGCUC- -5'
7763 3' -56.5 NC_001973.1 + 130960 0.66 0.886005
Target:  5'- gGCgGAcGCGUAAGAUcuuaCGCGUcGGCGAGg -3'
miRNA:   3'- -CGgCU-CGUGUUCUA----GCGCGuCCGCUC- -5'
7763 3' -56.5 NC_001973.1 + 132539 0.66 0.886005
Target:  5'- cGCCGGGCGCGgcggcGGGcucgaGCGC-GGCGGu -3'
miRNA:   3'- -CGGCUCGUGU-----UCUag---CGCGuCCGCUc -5'
7763 3' -56.5 NC_001973.1 + 144338 0.66 0.886005
Target:  5'- cCCGGGCAagcGGAU-GCGCgAGGaCGAGg -3'
miRNA:   3'- cGGCUCGUgu-UCUAgCGCG-UCC-GCUC- -5'
7763 3' -56.5 NC_001973.1 + 10777 0.66 0.886005
Target:  5'- cGUCGuguuGCACcAGcagcGUCGCGUAGGCGc- -3'
miRNA:   3'- -CGGCu---CGUGuUC----UAGCGCGUCCGCuc -5'
7763 3' -56.5 NC_001973.1 + 20055 0.66 0.886005
Target:  5'- -gCGGGCGCAGGAaCGCGUAcugguccccgccGaGCGAGc -3'
miRNA:   3'- cgGCUCGUGUUCUaGCGCGU------------C-CGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.