Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7763 | 5' | -55.2 | NC_001973.1 | + | 58642 | 0.68 | 0.849174 |
Target: 5'- cUUCgacgCCGGCGGCGuGUucaACGCgGACg -3' miRNA: 3'- -AAGaaaaGGCCGCUGC-CG---UGCGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 59025 | 1.06 | 0.004777 |
Target: 5'- gUUCUUUUCCGGCGACGGCACGCUGACc -3' miRNA: 3'- -AAGAAAAGGCCGCUGCCGUGCGACUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 61012 | 0.75 | 0.47677 |
Target: 5'- -gCUcUUCCGGCGGaGGCGCGC-GACg -3' miRNA: 3'- aaGAaAAGGCCGCUgCCGUGCGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 74792 | 0.67 | 0.879671 |
Target: 5'- gUCg---CCGGgGugGGCGCGCacgcgaGGCg -3' miRNA: 3'- aAGaaaaGGCCgCugCCGUGCGa-----CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 77011 | 0.74 | 0.496071 |
Target: 5'- cUCg--UCgggCGGCGGCGGCGCGCgcaagGACg -3' miRNA: 3'- aAGaaaAG---GCCGCUGCCGUGCGa----CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 81938 | 0.74 | 0.515718 |
Target: 5'- aUCggcgUCCGGCG-CGGagaaGCGCUGGCc -3' miRNA: 3'- aAGaaa-AGGCCGCuGCCg---UGCGACUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 88550 | 0.69 | 0.773322 |
Target: 5'- gUCcacgCCGGCGuCGGCGCGCgcccuccgcacgcacUGGCg -3' miRNA: 3'- aAGaaaaGGCCGCuGCCGUGCG---------------ACUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 95793 | 0.68 | 0.841027 |
Target: 5'- -gCUggaCCGGCguGACGGCuACGCgGACg -3' miRNA: 3'- aaGAaaaGGCCG--CUGCCG-UGCGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 96577 | 0.77 | 0.361682 |
Target: 5'- aUCUg--CgCGGUGGCGGCGgCGCUGGCg -3' miRNA: 3'- aAGAaaaG-GCCGCUGCCGU-GCGACUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 97278 | 0.67 | 0.886743 |
Target: 5'- gUCg---CCGGCGAgGGCuucuacaauuGCGCcGACg -3' miRNA: 3'- aAGaaaaGGCCGCUgCCG----------UGCGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 98338 | 0.7 | 0.730453 |
Target: 5'- -gCUgcagCGGCGGCGGCGCGCguucGGCc -3' miRNA: 3'- aaGAaaagGCCGCUGCCGUGCGa---CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 100934 | 0.7 | 0.720444 |
Target: 5'- ------aCUGGUGAUGGCGCGCUcGGCc -3' miRNA: 3'- aagaaaaGGCCGCUGCCGUGCGA-CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 104262 | 0.67 | 0.872373 |
Target: 5'- -----gUUCGGCGGCGGCGcCGCcgccgGGCu -3' miRNA: 3'- aagaaaAGGCCGCUGCCGU-GCGa----CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 105677 | 0.66 | 0.912683 |
Target: 5'- gUUUUgcgagUCGGuCGugaGCGGCACGCUGAa -3' miRNA: 3'- aAGAAaa---GGCC-GC---UGCCGUGCGACUg -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 117504 | 0.69 | 0.806569 |
Target: 5'- -gCUUUggCCGcCGGCGGCGCGUaGACu -3' miRNA: 3'- aaGAAAa-GGCcGCUGCCGUGCGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 122525 | 0.67 | 0.879671 |
Target: 5'- gUCUUUgucgggggaCGaGCGGCGGCGgCGCUGGu -3' miRNA: 3'- aAGAAAag-------GC-CGCUGCCGU-GCGACUg -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 123879 | 0.67 | 0.879671 |
Target: 5'- --------gGGaCGACGGCACGCUGGu -3' miRNA: 3'- aagaaaaggCC-GCUGCCGUGCGACUg -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 125338 | 0.66 | 0.906557 |
Target: 5'- gUCUcUUCgCGGCGACGGUggaGC-GGCa -3' miRNA: 3'- aAGAaAAG-GCCGCUGCCGug-CGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 133294 | 0.68 | 0.857118 |
Target: 5'- -aCgcggCCGGCGGCGGCgccgucGCGC-GGCg -3' miRNA: 3'- aaGaaaaGGCCGCUGCCG------UGCGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 135936 | 0.67 | 0.886046 |
Target: 5'- -------gCGGCGAUGGCGCGCcaagugcgccaagUGGCa -3' miRNA: 3'- aagaaaagGCCGCUGCCGUGCG-------------ACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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