Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7763 | 5' | -55.2 | NC_001973.1 | + | 959 | 0.68 | 0.857118 |
Target: 5'- ----cUUCCGGCG-CGG-ACGCUcGACg -3' miRNA: 3'- aagaaAAGGCCGCuGCCgUGCGA-CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 3562 | 0.67 | 0.90019 |
Target: 5'- ------gCCGGCGG-GGCGCGCgaUGACc -3' miRNA: 3'- aagaaaaGGCCGCUgCCGUGCG--ACUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 6419 | 0.75 | 0.448539 |
Target: 5'- -------gCGGCGGCGGCGCGCcGACg -3' miRNA: 3'- aagaaaagGCCGCUGCCGUGCGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 7767 | 0.66 | 0.924203 |
Target: 5'- -------gCGGCGGCGGCGucgaggaGCUGGCu -3' miRNA: 3'- aagaaaagGCCGCUGCCGUg------CGACUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 16900 | 0.66 | 0.918565 |
Target: 5'- gUUCgcg-CCGGCGGCGGCG-GCcucucGGCg -3' miRNA: 3'- -AAGaaaaGGCCGCUGCCGUgCGa----CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 22963 | 0.71 | 0.679727 |
Target: 5'- cUCgaguaCGcGCGGCGGCGCGCcGACg -3' miRNA: 3'- aAGaaaagGC-CGCUGCCGUGCGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 28394 | 0.71 | 0.710358 |
Target: 5'- cUUCgcg-CCGGCGACGccgucagugaGCGCGCUuGGCg -3' miRNA: 3'- -AAGaaaaGGCCGCUGC----------CGUGCGA-CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 30400 | 0.66 | 0.906557 |
Target: 5'- -------gCGGCGGCGGCGgCGgaGGCg -3' miRNA: 3'- aagaaaagGCCGCUGCCGU-GCgaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 35136 | 0.71 | 0.707318 |
Target: 5'- -cCUccgCCGGCGACaGGCcccgcuugauggcgACGCUGGCg -3' miRNA: 3'- aaGAaaaGGCCGCUG-CCG--------------UGCGACUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 35681 | 0.67 | 0.879671 |
Target: 5'- ------gCCGaCGGCGGCGCGgUGGCg -3' miRNA: 3'- aagaaaaGGCcGCUGCCGUGCgACUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 36567 | 0.67 | 0.893584 |
Target: 5'- ---gUUUuuGGCG--GGCGCGUUGACg -3' miRNA: 3'- aagaAAAggCCGCugCCGUGCGACUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 38841 | 0.66 | 0.924203 |
Target: 5'- -------gCGGCGGCGGCgaggGCGCgGGCg -3' miRNA: 3'- aagaaaagGCCGCUGCCG----UGCGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 45959 | 0.72 | 0.638364 |
Target: 5'- cUCUUga-CGGCGGcCGGCGCGCUcGCc -3' miRNA: 3'- aAGAAaagGCCGCU-GCCGUGCGAcUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 52627 | 0.66 | 0.929594 |
Target: 5'- gUCgggacgCCGGuCGACGaGCACGCccgccacguUGGCg -3' miRNA: 3'- aAGaaaa--GGCC-GCUGC-CGUGCG---------ACUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 53672 | 0.66 | 0.918565 |
Target: 5'- cUCUUUgcuggcgcgUCUGGCGuugcgauuCGGCGCcgagGCUGACc -3' miRNA: 3'- aAGAAA---------AGGCCGCu-------GCCGUG----CGACUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 53851 | 0.67 | 0.872373 |
Target: 5'- cUCgcc-CCGGCGGCGGCggcgccgccgaGCGC-GGCg -3' miRNA: 3'- aAGaaaaGGCCGCUGCCG-----------UGCGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 55424 | 0.7 | 0.750198 |
Target: 5'- uUUCg---UCGGCGGCGGCGgGCccGACg -3' miRNA: 3'- -AAGaaaaGGCCGCUGCCGUgCGa-CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 55878 | 0.74 | 0.505854 |
Target: 5'- cUUUUUgggaCCGGCGGCGGCAgGCUcgGGCu -3' miRNA: 3'- aAGAAAa---GGCCGCUGCCGUgCGA--CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 56171 | 0.69 | 0.806569 |
Target: 5'- gUCgucgCUGuCGGCGGCGCGCUcGACg -3' miRNA: 3'- aAGaaaaGGCcGCUGCCGUGCGA-CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 58038 | 0.69 | 0.788331 |
Target: 5'- cUCgggcUCCGGCGGCGGCG-GC-GGCu -3' miRNA: 3'- aAGaaa-AGGCCGCUGCCGUgCGaCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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