Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7763 | 5' | -55.2 | NC_001973.1 | + | 59025 | 1.06 | 0.004777 |
Target: 5'- gUUCUUUUCCGGCGACGGCACGCUGACc -3' miRNA: 3'- -AAGAAAAGGCCGCUGCCGUGCGACUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 96577 | 0.77 | 0.361682 |
Target: 5'- aUCUg--CgCGGUGGCGGCGgCGCUGGCg -3' miRNA: 3'- aAGAaaaG-GCCGCUGCCGU-GCGACUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 6419 | 0.75 | 0.448539 |
Target: 5'- -------gCGGCGGCGGCGCGCcGACg -3' miRNA: 3'- aagaaaagGCCGCUGCCGUGCGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 61012 | 0.75 | 0.47677 |
Target: 5'- -gCUcUUCCGGCGGaGGCGCGC-GACg -3' miRNA: 3'- aaGAaAAGGCCGCUgCCGUGCGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 77011 | 0.74 | 0.496071 |
Target: 5'- cUCg--UCgggCGGCGGCGGCGCGCgcaagGACg -3' miRNA: 3'- aAGaaaAG---GCCGCUGCCGUGCGa----CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 55878 | 0.74 | 0.505854 |
Target: 5'- cUUUUUgggaCCGGCGGCGGCAgGCUcgGGCu -3' miRNA: 3'- aAGAAAa---GGCCGCUGCCGUgCGA--CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 81938 | 0.74 | 0.515718 |
Target: 5'- aUCggcgUCCGGCG-CGGagaaGCGCUGGCc -3' miRNA: 3'- aAGaaa-AGGCCGCuGCCg---UGCGACUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 45959 | 0.72 | 0.638364 |
Target: 5'- cUCUUga-CGGCGGcCGGCGCGCUcGCc -3' miRNA: 3'- aAGAAaagGCCGCU-GCCGUGCGAcUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 22963 | 0.71 | 0.679727 |
Target: 5'- cUCgaguaCGcGCGGCGGCGCGCcGACg -3' miRNA: 3'- aAGaaaagGC-CGCUGCCGUGCGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 35136 | 0.71 | 0.707318 |
Target: 5'- -cCUccgCCGGCGACaGGCcccgcuugauggcgACGCUGGCg -3' miRNA: 3'- aaGAaaaGGCCGCUG-CCG--------------UGCGACUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 28394 | 0.71 | 0.710358 |
Target: 5'- cUUCgcg-CCGGCGACGccgucagugaGCGCGCUuGGCg -3' miRNA: 3'- -AAGaaaaGGCCGCUGC----------CGUGCGA-CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 100934 | 0.7 | 0.720444 |
Target: 5'- ------aCUGGUGAUGGCGCGCUcGGCc -3' miRNA: 3'- aagaaaaGGCCGCUGCCGUGCGA-CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 98338 | 0.7 | 0.730453 |
Target: 5'- -gCUgcagCGGCGGCGGCGCGCguucGGCc -3' miRNA: 3'- aaGAaaagGCCGCUGCCGUGCGa---CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 55424 | 0.7 | 0.750198 |
Target: 5'- uUUCg---UCGGCGGCGGCGgGCccGACg -3' miRNA: 3'- -AAGaaaaGGCCGCUGCCGUgCGa-CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 88550 | 0.69 | 0.773322 |
Target: 5'- gUCcacgCCGGCGuCGGCGCGCgcccuccgcacgcacUGGCg -3' miRNA: 3'- aAGaaaaGGCCGCuGCCGUGCG---------------ACUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 58038 | 0.69 | 0.788331 |
Target: 5'- cUCgggcUCCGGCGGCGGCG-GC-GGCu -3' miRNA: 3'- aAGaaa-AGGCCGCUGCCGUgCGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 56171 | 0.69 | 0.806569 |
Target: 5'- gUCgucgCUGuCGGCGGCGCGCUcGACg -3' miRNA: 3'- aAGaaaaGGCcGCUGCCGUGCGA-CUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 117504 | 0.69 | 0.806569 |
Target: 5'- -gCUUUggCCGcCGGCGGCGCGUaGACu -3' miRNA: 3'- aaGAAAa-GGCcGCUGCCGUGCGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 158822 | 0.68 | 0.824157 |
Target: 5'- aUUgaagCCGGCGGcCGaGCGCGCgGACg -3' miRNA: 3'- aAGaaaaGGCCGCU-GC-CGUGCGaCUG- -5' |
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7763 | 5' | -55.2 | NC_001973.1 | + | 95793 | 0.68 | 0.841027 |
Target: 5'- -gCUggaCCGGCguGACGGCuACGCgGACg -3' miRNA: 3'- aaGAaaaGGCCG--CUGCCG-UGCGaCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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