miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7770 3' -51 NC_001973.1 + 4978 0.66 0.99452
Target:  5'- cGGUCGUGCGaccgaagguguCGUCGUuggaCGCGUcCACUAc -3'
miRNA:   3'- -CUAGUACGU-----------GUAGCA----GCGCAuGUGGU- -5'
7770 3' -51 NC_001973.1 + 148759 0.66 0.99452
Target:  5'- cAUCAaguuuUGCGC-UCGUUGCaaUGCACCAg -3'
miRNA:   3'- cUAGU-----ACGUGuAGCAGCGc-AUGUGGU- -5'
7770 3' -51 NC_001973.1 + 44908 0.66 0.99452
Target:  5'- gGGUcCAUGUGCGUgaCG-CGCGUcACGCCAa -3'
miRNA:   3'- -CUA-GUACGUGUA--GCaGCGCA-UGUGGU- -5'
7770 3' -51 NC_001973.1 + 4876 0.66 0.99452
Target:  5'- --cCGUGCucguACAagGgcagCGCGUACGCCGg -3'
miRNA:   3'- cuaGUACG----UGUagCa---GCGCAUGUGGU- -5'
7770 3' -51 NC_001973.1 + 38087 0.66 0.993648
Target:  5'- uGUCGcGgGCGUCuuUCGCGUugACCAg -3'
miRNA:   3'- cUAGUaCgUGUAGc-AGCGCAugUGGU- -5'
7770 3' -51 NC_001973.1 + 69676 0.66 0.992668
Target:  5'- aGGUCggGCGCG--GUCGCGUGCAg-- -3'
miRNA:   3'- -CUAGuaCGUGUagCAGCGCAUGUggu -5'
7770 3' -51 NC_001973.1 + 87114 0.66 0.99157
Target:  5'- uGcgCGUGCGCggCGUgCGCGcgccggUGCGCCGc -3'
miRNA:   3'- -CuaGUACGUGuaGCA-GCGC------AUGUGGU- -5'
7770 3' -51 NC_001973.1 + 140873 0.66 0.99157
Target:  5'- cGggCGUGCGCAUcugcgcggCGUCGCGcGCGacCCAg -3'
miRNA:   3'- -CuaGUACGUGUA--------GCAGCGCaUGU--GGU- -5'
7770 3' -51 NC_001973.1 + 57963 0.66 0.991454
Target:  5'- ---aAUGCACGcgcCGUCGCccuucauGUGCGCCAc -3'
miRNA:   3'- cuagUACGUGUa--GCAGCG-------CAUGUGGU- -5'
7770 3' -51 NC_001973.1 + 37828 0.66 0.990347
Target:  5'- -uUCGUGgGCGUCGUCGCccGCGUCGu -3'
miRNA:   3'- cuAGUACgUGUAGCAGCGcaUGUGGU- -5'
7770 3' -51 NC_001973.1 + 6880 0.67 0.988988
Target:  5'- aGAUCuUGCACGUCGagcgccacacUCGCGgcCAguCCAa -3'
miRNA:   3'- -CUAGuACGUGUAGC----------AGCGCauGU--GGU- -5'
7770 3' -51 NC_001973.1 + 7948 0.67 0.988988
Target:  5'- cGUgGUGCACGcgcccgCGUgCGCGUACGCgCGa -3'
miRNA:   3'- cUAgUACGUGUa-----GCA-GCGCAUGUG-GU- -5'
7770 3' -51 NC_001973.1 + 34677 0.67 0.988988
Target:  5'- cGAUCGUGUccgugcucuugaACGcgGUCGCGUgccACGCCAg -3'
miRNA:   3'- -CUAGUACG------------UGUagCAGCGCA---UGUGGU- -5'
7770 3' -51 NC_001973.1 + 121659 0.67 0.987486
Target:  5'- -cUCGaaggGCGCGUCGcUCGCG-GCGCCc -3'
miRNA:   3'- cuAGUa---CGUGUAGC-AGCGCaUGUGGu -5'
7770 3' -51 NC_001973.1 + 123430 0.67 0.987486
Target:  5'- ---gGUGCACgcgGUCGUCaGCGgcacGCACCGg -3'
miRNA:   3'- cuagUACGUG---UAGCAG-CGCa---UGUGGU- -5'
7770 3' -51 NC_001973.1 + 33571 0.67 0.987486
Target:  5'- -----cGCACAgCGUCGCcucgcucgacacGUGCACCAc -3'
miRNA:   3'- cuaguaCGUGUaGCAGCG------------CAUGUGGU- -5'
7770 3' -51 NC_001973.1 + 113376 0.67 0.987486
Target:  5'- gGAUCAUGCugAucUCGUCGaugaugacGCACCu -3'
miRNA:   3'- -CUAGUACGugU--AGCAGCgca-----UGUGGu -5'
7770 3' -51 NC_001973.1 + 137553 0.67 0.985829
Target:  5'- --cCGUcGUACGUCGUCGCGa--GCCGc -3'
miRNA:   3'- cuaGUA-CGUGUAGCAGCGCaugUGGU- -5'
7770 3' -51 NC_001973.1 + 6105 0.67 0.985829
Target:  5'- --aCGUGCGCAUgaCGgcgCGCGaggGCGCCGc -3'
miRNA:   3'- cuaGUACGUGUA--GCa--GCGCa--UGUGGU- -5'
7770 3' -51 NC_001973.1 + 81248 0.67 0.98401
Target:  5'- aGAUguUGCGCAgcaggUCGUCG-GUGCACa- -3'
miRNA:   3'- -CUAguACGUGU-----AGCAGCgCAUGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.