miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7781 3' -56.9 NC_001973.1 + 131786 0.66 0.881216
Target:  5'- -gCgGCCG-GCUCGGUgaaGGGGCc-- -3'
miRNA:   3'- caGgCGGCuCGAGUCAaa-CCCCGuac -5'
7781 3' -56.9 NC_001973.1 + 56445 0.66 0.866699
Target:  5'- --gCGCCaAGCUCGGgc-GGGGCGg- -3'
miRNA:   3'- cagGCGGcUCGAGUCaaaCCCCGUac -5'
7781 3' -56.9 NC_001973.1 + 56472 0.66 0.866699
Target:  5'- --gCGCCaAGCUCGGgc-GGGGCGg- -3'
miRNA:   3'- cagGCGGcUCGAGUCaaaCCCCGUac -5'
7781 3' -56.9 NC_001973.1 + 56499 0.66 0.866699
Target:  5'- --gCGCCaAGCUCGGgc-GGGGCGg- -3'
miRNA:   3'- cagGCGGcUCGAGUCaaaCCCCGUac -5'
7781 3' -56.9 NC_001973.1 + 56526 0.66 0.866699
Target:  5'- --gCGCCaAGCUCGGgc-GGGGCGg- -3'
miRNA:   3'- cagGCGGcUCGAGUCaaaCCCCGUac -5'
7781 3' -56.9 NC_001973.1 + 158794 0.66 0.866699
Target:  5'- uGUUCGCCGAGaUCAGacagGGGGuCAa- -3'
miRNA:   3'- -CAGGCGGCUCgAGUCaaa-CCCC-GUac -5'
7781 3' -56.9 NC_001973.1 + 4871 0.66 0.859121
Target:  5'- uUCCGCCGuGCUCGuacaaGGGCAg- -3'
miRNA:   3'- cAGGCGGCuCGAGUcaaacCCCGUac -5'
7781 3' -56.9 NC_001973.1 + 146016 0.66 0.858352
Target:  5'- gGUCCGCCG-GCUCGagcgcgggucgacGgacGGGGCGa- -3'
miRNA:   3'- -CAGGCGGCuCGAGU-------------CaaaCCCCGUac -5'
7781 3' -56.9 NC_001973.1 + 56410 0.67 0.835182
Target:  5'- ---aGCCGAGCUCGGUaucgggcucGGGGCu-- -3'
miRNA:   3'- caggCGGCUCGAGUCAaa-------CCCCGuac -5'
7781 3' -56.9 NC_001973.1 + 96034 0.67 0.818288
Target:  5'- --gCGCgCGAGCUCGGgcUGGGcggucuguucGCGUGg -3'
miRNA:   3'- cagGCG-GCUCGAGUCaaACCC----------CGUAC- -5'
7781 3' -56.9 NC_001973.1 + 109518 0.68 0.754279
Target:  5'- cGUUCGCCGcuuGGCUCuugcgcuUUUGGGGCGc- -3'
miRNA:   3'- -CAGGCGGC---UCGAGuc-----AAACCCCGUac -5'
7781 3' -56.9 NC_001973.1 + 92785 0.68 0.748503
Target:  5'- uGUCCGCgGAcgaggacgaguccaaGUUCGGUgcUGGGGCGUc -3'
miRNA:   3'- -CAGGCGgCU---------------CGAGUCAa-ACCCCGUAc -5'
7781 3' -56.9 NC_001973.1 + 21282 0.69 0.734886
Target:  5'- cGUCCGCCGGGCcgucgcUCAGUcgucGGGCuUGc -3'
miRNA:   3'- -CAGGCGGCUCG------AGUCAaac-CCCGuAC- -5'
7781 3' -56.9 NC_001973.1 + 71774 0.69 0.695101
Target:  5'- -gCCGCCGAGCUCgAGgccGGcGGCGc- -3'
miRNA:   3'- caGGCGGCUCGAG-UCaaaCC-CCGUac -5'
7781 3' -56.9 NC_001973.1 + 29971 0.7 0.674856
Target:  5'- --aCGCCG-GCUCGGUggUGGGcGCGUa -3'
miRNA:   3'- cagGCGGCuCGAGUCAa-ACCC-CGUAc -5'
7781 3' -56.9 NC_001973.1 + 80796 0.7 0.634016
Target:  5'- uUUCGCUGAGCgucuucaaCAGUUUGGGGUu-- -3'
miRNA:   3'- cAGGCGGCUCGa-------GUCAAACCCCGuac -5'
7781 3' -56.9 NC_001973.1 + 114764 0.76 0.345772
Target:  5'- cGUCCG-CGAGCUCAGUUUa-GGCGUGa -3'
miRNA:   3'- -CAGGCgGCUCGAGUCAAAccCCGUAC- -5'
7781 3' -56.9 NC_001973.1 + 114918 0.79 0.238041
Target:  5'- cGUCCaCCGAGCUCgAGUUU-GGGCAUGa -3'
miRNA:   3'- -CAGGcGGCUCGAG-UCAAAcCCCGUAC- -5'
7781 3' -56.9 NC_001973.1 + 114608 0.8 0.190747
Target:  5'- cGUCCGCCGAGCUCAaGUUaa-GGCAUGa -3'
miRNA:   3'- -CAGGCGGCUCGAGU-CAAaccCCGUAC- -5'
7781 3' -56.9 NC_001973.1 + 41106 0.8 0.190271
Target:  5'- cGUCCGCCGAGCUCgAGUUUGGucauuuaguugucGGCGg- -3'
miRNA:   3'- -CAGGCGGCUCGAG-UCAAACC-------------CCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.