miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7781 5' -58.5 NC_001973.1 + 38618 0.66 0.855908
Target:  5'- cGCUUGuAACaCUGucggCGACaCCGGCCGu -3'
miRNA:   3'- cCGAAC-UUG-GGCua--GCUGgGGCCGGC- -5'
7781 5' -58.5 NC_001973.1 + 86585 0.66 0.848315
Target:  5'- aGGCg-GAGCUCGcgCG-CgCCGGCCu -3'
miRNA:   3'- -CCGaaCUUGGGCuaGCuGgGGCCGGc -5'
7781 5' -58.5 NC_001973.1 + 21032 0.66 0.841325
Target:  5'- uGCUUGuaccgaugacaucauGCCCGAgcUCGAgCUCGGCgGg -3'
miRNA:   3'- cCGAACu--------------UGGGCU--AGCUgGGGCCGgC- -5'
7781 5' -58.5 NC_001973.1 + 142408 0.66 0.840539
Target:  5'- uGGa--GAGCCggcagaCGAUCGugCCCGGCg- -3'
miRNA:   3'- -CCgaaCUUGG------GCUAGCugGGGCCGgc -5'
7781 5' -58.5 NC_001973.1 + 53867 0.66 0.840539
Target:  5'- cGGCgccgccGAGCgCGG-CGGCCgUGGCCGc -3'
miRNA:   3'- -CCGaa----CUUGgGCUaGCUGGgGCCGGC- -5'
7781 5' -58.5 NC_001973.1 + 150197 0.67 0.824464
Target:  5'- ---gUGGGCCgCGGcUCGGCCUCGGCUu -3'
miRNA:   3'- ccgaACUUGG-GCU-AGCUGGGGCCGGc -5'
7781 5' -58.5 NC_001973.1 + 128557 0.67 0.824464
Target:  5'- uGCUUGAA-CCGcUUGGCCgCCGGCa- -3'
miRNA:   3'- cCGAACUUgGGCuAGCUGG-GGCCGgc -5'
7781 5' -58.5 NC_001973.1 + 108936 0.67 0.816179
Target:  5'- cGCUgcucgcGAACUCGAgcaaggCGcACCCgGGCCGc -3'
miRNA:   3'- cCGAa-----CUUGGGCUa-----GC-UGGGgCCGGC- -5'
7781 5' -58.5 NC_001973.1 + 126582 0.67 0.816179
Target:  5'- gGGCUUGGcgaucacguCCUGggCGAUgUCGGCCa -3'
miRNA:   3'- -CCGAACUu--------GGGCuaGCUGgGGCCGGc -5'
7781 5' -58.5 NC_001973.1 + 27839 0.67 0.815342
Target:  5'- -uCUUGcGGCCCGGUuggccggcgcuggCGGCCgCGGCCGc -3'
miRNA:   3'- ccGAAC-UUGGGCUA-------------GCUGGgGCCGGC- -5'
7781 5' -58.5 NC_001973.1 + 143139 0.67 0.807737
Target:  5'- aGGCacaaucgUGcguGCCCGcAUCGACgCCGGgCGg -3'
miRNA:   3'- -CCGa------ACu--UGGGC-UAGCUGgGGCCgGC- -5'
7781 5' -58.5 NC_001973.1 + 41819 0.67 0.781553
Target:  5'- uGGaCUUcGAGCCCGAcacCGAgCCgCGGCUGc -3'
miRNA:   3'- -CC-GAA-CUUGGGCUa--GCUgGG-GCCGGC- -5'
7781 5' -58.5 NC_001973.1 + 49688 0.67 0.778869
Target:  5'- cGGCgaUGGACCUG-UCGAgCCgcgccgugcaguauCCGGCCGa -3'
miRNA:   3'- -CCGa-ACUUGGGCuAGCU-GG--------------GGCCGGC- -5'
7781 5' -58.5 NC_001973.1 + 151177 0.68 0.776174
Target:  5'- gGGCccu-GCCCGGUCaGagccgaugacaucauGCCUCGGCCGg -3'
miRNA:   3'- -CCGaacuUGGGCUAG-C---------------UGGGGCCGGC- -5'
7781 5' -58.5 NC_001973.1 + 102230 0.68 0.772564
Target:  5'- gGGCgagGuuUCCGAUCGACUgCGcGCCu -3'
miRNA:   3'- -CCGaa-CuuGGGCUAGCUGGgGC-CGGc -5'
7781 5' -58.5 NC_001973.1 + 40826 0.68 0.772564
Target:  5'- gGGCgUGAcCUCcAUCGACCCUaGCCGa -3'
miRNA:   3'- -CCGaACUuGGGcUAGCUGGGGcCGGC- -5'
7781 5' -58.5 NC_001973.1 + 155378 0.68 0.772564
Target:  5'- gGGCccgUUGAGCCCGcucUCGAgCCCGuugaGCCu -3'
miRNA:   3'- -CCG---AACUUGGGCu--AGCUgGGGC----CGGc -5'
7781 5' -58.5 NC_001973.1 + 155441 0.68 0.763459
Target:  5'- gGGCccggUGAGCCUGcucUCGAgCCCGGUg- -3'
miRNA:   3'- -CCGa---ACUUGGGCu--AGCUgGGGCCGgc -5'
7781 5' -58.5 NC_001973.1 + 114796 0.68 0.754245
Target:  5'- cGGCUUGAcCUCcAUCGACCCUaaCCGa -3'
miRNA:   3'- -CCGAACUuGGGcUAGCUGGGGccGGC- -5'
7781 5' -58.5 NC_001973.1 + 45841 0.68 0.736468
Target:  5'- cGGCguucgUGGGCCUGggCGucgcgggcgcgcgcuCCUCGGCCGc -3'
miRNA:   3'- -CCGa----ACUUGGGCuaGCu--------------GGGGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.