miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
780 3' -56.2 NC_000852.3 + 306163 0.66 0.986844
Target:  5'- ---cGCCCGCcCCGAGAuCCUGUgggUCCa -3'
miRNA:   3'- gcuuUGGGCGaGGCUUU-GGGCG---AGGc -5'
780 3' -56.2 NC_000852.3 + 282095 0.66 0.986844
Target:  5'- aGAAGCCCGa---GGuuCCCGUUCCc -3'
miRNA:   3'- gCUUUGGGCgaggCUuuGGGCGAGGc -5'
780 3' -56.2 NC_000852.3 + 62935 0.66 0.985291
Target:  5'- -aGAACCCGUUaCC---ACCCGCUgCCGu -3'
miRNA:   3'- gcUUUGGGCGA-GGcuuUGGGCGA-GGC- -5'
780 3' -56.2 NC_000852.3 + 104628 0.66 0.98177
Target:  5'- uGAAACaCCGCUCgCGGAAUUCaUUCCa -3'
miRNA:   3'- gCUUUG-GGCGAG-GCUUUGGGcGAGGc -5'
780 3' -56.2 NC_000852.3 + 76332 0.66 0.977651
Target:  5'- -cAAACCCGCaCCcAAACCCGCaCCc -3'
miRNA:   3'- gcUUUGGGCGaGGcUUUGGGCGaGGc -5'
780 3' -56.2 NC_000852.3 + 76308 0.66 0.977651
Target:  5'- -cAAACCCGCaCCcAAACCCGCaCCc -3'
miRNA:   3'- gcUUUGGGCGaGGcUUUGGGCGaGGc -5'
780 3' -56.2 NC_000852.3 + 76284 0.66 0.977651
Target:  5'- -cAAACCCGCaCCcAAACCCGCaCCc -3'
miRNA:   3'- gcUUUGGGCGaGGcUUUGGGCGaGGc -5'
780 3' -56.2 NC_000852.3 + 22150 0.66 0.977651
Target:  5'- -cAAACCCGCaCCcAAACCCGCaCCc -3'
miRNA:   3'- gcUUUGGGCGaGGcUUUGGGCGaGGc -5'
780 3' -56.2 NC_000852.3 + 5567 0.66 0.976979
Target:  5'- aCGAGACUgGUaaaaagaaggauccUCCGAuuCCCGCUgCa -3'
miRNA:   3'- -GCUUUGGgCG--------------AGGCUuuGGGCGAgGc -5'
780 3' -56.2 NC_000852.3 + 227220 0.67 0.972884
Target:  5'- aGAGGCCCGCUUggcuuUGGAAUaCGUUCCu -3'
miRNA:   3'- gCUUUGGGCGAG-----GCUUUGgGCGAGGc -5'
780 3' -56.2 NC_000852.3 + 329359 0.67 0.970243
Target:  5'- uGGGcUCCGCUCCuGGucgaacaugGGCuCCGCUCCGc -3'
miRNA:   3'- gCUUuGGGCGAGG-CU---------UUG-GGCGAGGC- -5'
780 3' -56.2 NC_000852.3 + 1385 0.67 0.970243
Target:  5'- uGGGcUCCGCUCCuGGucgaacaugGGCuCCGCUCCGc -3'
miRNA:   3'- gCUUuGGGCGAGG-CU---------UUG-GGCGAGGC- -5'
780 3' -56.2 NC_000852.3 + 188890 0.67 0.970243
Target:  5'- -uAAACCCGCaCCuAAACCCGCaCCu -3'
miRNA:   3'- gcUUUGGGCGaGGcUUUGGGCGaGGc -5'
780 3' -56.2 NC_000852.3 + 188914 0.67 0.970243
Target:  5'- -uAAACCCGCaCCuAAACCCGCaCCu -3'
miRNA:   3'- gcUUUGGGCGaGGcUUUGGGCGaGGc -5'
780 3' -56.2 NC_000852.3 + 76404 0.67 0.970243
Target:  5'- -uAAACCCGCaCCuAAACCCGCaCCu -3'
miRNA:   3'- gcUUUGGGCGaGGcUUUGGGCGaGGc -5'
780 3' -56.2 NC_000852.3 + 76380 0.67 0.967422
Target:  5'- -cAAACCCGCaCCcAAACCCGCaCCu -3'
miRNA:   3'- gcUUUGGGCGaGGcUUUGGGCGaGGc -5'
780 3' -56.2 NC_000852.3 + 197396 0.67 0.967422
Target:  5'- nGAAACCUGCaCCGAAGUCCGCa--- -3'
miRNA:   3'- gCUUUGGGCGaGGCUUUGGGCGaggc -5'
780 3' -56.2 NC_000852.3 + 210481 0.67 0.964107
Target:  5'- uGAAGCCCGCuggucgccaacccUCCGguACCUGCaacuucUCCc -3'
miRNA:   3'- gCUUUGGGCG-------------AGGCuuUGGGCG------AGGc -5'
780 3' -56.2 NC_000852.3 + 273580 0.67 0.961224
Target:  5'- -aGAACCUGCUCCugugccaaGAccaacgccagAACCUGCUCCu -3'
miRNA:   3'- gcUUUGGGCGAGG--------CU----------UUGGGCGAGGc -5'
780 3' -56.2 NC_000852.3 + 197612 0.67 0.961224
Target:  5'- -aAAGCCCGCaCCaAAACCCGCaUCGa -3'
miRNA:   3'- gcUUUGGGCGaGGcUUUGGGCGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.