miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
780 5' -57.1 NC_000852.3 + 122591 0.8 0.343507
Target:  5'- aCCGAAGCCUGCaCCgAAGCCCGCg- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 122627 0.79 0.36587
Target:  5'- gCCGAAGCCUGCaCCgAAGCCCGCg- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 122651 0.73 0.691923
Target:  5'- gCCGAAACCCGCgCCgaaaCCCGCg- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 122675 0.73 0.691923
Target:  5'- gCCGAAACCCGCgCCgaaaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 122711 0.7 0.849377
Target:  5'- aCCGAAACCCGCaCCgAAGCCUa--- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGcgag -5'
780 5' -57.1 NC_000852.3 + 132627 0.67 0.935343
Target:  5'- -gCGAAACCUGCUCCguauuauacGAGCCC-Ca- -3'
miRNA:   3'- agGCUUUGGGCGAGGa--------UUCGGGcGag -5'
780 5' -57.1 NC_000852.3 + 138189 0.69 0.891131
Target:  5'- uUCU---GCCCGCaUCCUGAGCCC-UUCu -3'
miRNA:   3'- -AGGcuuUGGGCG-AGGAUUCGGGcGAG- -5'
780 5' -57.1 NC_000852.3 + 156333 0.72 0.710961
Target:  5'- uUCCGcgcCCUGCaaaUCCUAguggugucaaAGCCCGCUCg -3'
miRNA:   3'- -AGGCuuuGGGCG---AGGAU----------UCGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 158247 0.67 0.930564
Target:  5'- cCCuAAACCCGCcCCUAAaCCCGCn- -3'
miRNA:   3'- aGGcUUUGGGCGaGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 158271 0.8 0.322145
Target:  5'- aCCGAAGCCCGCUCCcAAaCCCGCc- -3'
miRNA:   3'- aGGCUUUGGGCGAGGaUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 158295 0.68 0.897397
Target:  5'- cCCuAAACCCGCaaCgAAGCCCGCa- -3'
miRNA:   3'- aGGcUUUGGGCGagGaUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 158331 0.8 0.343507
Target:  5'- aCCGAAACCCGCUCCUAAaCCCa--- -3'
miRNA:   3'- aGGCUUUGGGCGAGGAUUcGGGcgag -5'
780 5' -57.1 NC_000852.3 + 158379 0.86 0.153938
Target:  5'- aCCGAAACCCGCUCCUAAaCCUGCa- -3'
miRNA:   3'- aGGCUUUGGGCGAGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 158427 0.81 0.29523
Target:  5'- gCCGAAACCCGUaccaaggCCUAAGCCUGCa- -3'
miRNA:   3'- aGGCUUUGGGCGa------GGAUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 158463 0.68 0.909304
Target:  5'- aCCGAAACCCGUgCCaAAGCCUa--- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGcgag -5'
780 5' -57.1 NC_000852.3 + 158487 0.9 0.078728
Target:  5'- aCCGAAGCCaGCUCCUAAGCCCGCa- -3'
miRNA:   3'- aGGCUUUGGgCGAGGAUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 185304 0.67 0.944258
Target:  5'- aCCuAAGCCCuCUUCUAAGCCCuCUUc -3'
miRNA:   3'- aGGcUUUGGGcGAGGAUUCGGGcGAG- -5'
780 5' -57.1 NC_000852.3 + 188857 0.71 0.801282
Target:  5'- aCCuAAACCCGCgCCUAAaCCCGCg- -3'
miRNA:   3'- aGGcUUUGGGCGaGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 188893 0.69 0.856809
Target:  5'- aCCuAAACCCGCaCCUAAaCCCGCa- -3'
miRNA:   3'- aGGcUUUGGGCGaGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 188918 0.71 0.784075
Target:  5'- cUCCuAAACCCGCaCCUAAaCCCGCa- -3'
miRNA:   3'- -AGGcUUUGGGCGaGGAUUcGGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.