miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
780 5' -57.1 NC_000852.3 + 1382 0.69 0.856809
Target:  5'- cUuuGGGcUCCGCUCCUGgucgaacaugGGCuCCGCUCc -3'
miRNA:   3'- -AggCUUuGGGCGAGGAU----------UCG-GGCGAG- -5'
780 5' -57.1 NC_000852.3 + 22033 0.72 0.729758
Target:  5'- aCCGAAACCCGCaCCgaaaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 22057 0.72 0.729758
Target:  5'- aCCGAAACCCGCaCCgaaaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 24223 0.75 0.56638
Target:  5'- cUCCaAAACCCGCcCCUAaacccgcaccgaAGCCCGUUCc -3'
miRNA:   3'- -AGGcUUUGGGCGaGGAU------------UCGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 24308 0.79 0.350851
Target:  5'- gCCGAAACCUGCUCCcAAaCCUGCUCc -3'
miRNA:   3'- aGGCUUUGGGCGAGGaUUcGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 24332 0.68 0.909304
Target:  5'- nCCcAAACCCGUUCCaAAaCCCGUUCc -3'
miRNA:   3'- aGGcUUUGGGCGAGGaUUcGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 32170 0.77 0.473676
Target:  5'- cUCCuGAACCCaCUCCUGAaCCCGCUCc -3'
miRNA:   3'- -AGGcUUUGGGcGAGGAUUcGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 63723 0.7 0.82924
Target:  5'- aCUGGGACCCGUUCCcgAAGaaauaaccauuaccaCCCGCUg -3'
miRNA:   3'- aGGCUUUGGGCGAGGa-UUC---------------GGGCGAg -5'
780 5' -57.1 NC_000852.3 + 64664 0.7 0.82924
Target:  5'- aCUGGGACCCGUUCCcgAAGaaauaaccauuaccaCCCGCUg -3'
miRNA:   3'- aGGCUUUGGGCGAGGa-UUC---------------GGGCGAg -5'
780 5' -57.1 NC_000852.3 + 75010 0.71 0.775284
Target:  5'- ---uAAACCCGCUCCcAAaCCCGCUCc -3'
miRNA:   3'- aggcUUUGGGCGAGGaUUcGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 75703 0.68 0.897397
Target:  5'- aUCCGuGAACaaaaagaaCGCUCCUAAaCCCGCa- -3'
miRNA:   3'- -AGGC-UUUGg-------GCGAGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 76137 0.77 0.464807
Target:  5'- cCCuAAACCCGCUCCcAAaCCCGCUCc -3'
miRNA:   3'- aGGcUUUGGGCGAGGaUUcGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 76173 0.79 0.358305
Target:  5'- aCCcAAACCCGCUCCUAAaCCCGCa- -3'
miRNA:   3'- aGGcUUUGGGCGAGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 76209 0.7 0.817938
Target:  5'- aCCcAAACCCGCUCCUAAaCCCGn-- -3'
miRNA:   3'- aGGcUUUGGGCGAGGAUUcGGGCgag -5'
780 5' -57.1 NC_000852.3 + 76232 0.92 0.059503
Target:  5'- cUCCuAAACCCGCUCCUAAGCCCGCa- -3'
miRNA:   3'- -AGGcUUUGGGCGAGGAUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 76257 0.72 0.739046
Target:  5'- aCCGAAACCCGCaCCcAAaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 76389 0.69 0.856809
Target:  5'- aCCcAAACCCGCaCCUAAaCCCGCa- -3'
miRNA:   3'- aGGcUUUGGGCGaGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 109792 0.76 0.528534
Target:  5'- uUCCcaaAAACCCGCUCCaAAaCCCGCUCc -3'
miRNA:   3'- -AGGc--UUUGGGCGAGGaUUcGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 122543 0.76 0.528534
Target:  5'- aCCGAAGCCUGCaCCgAAGCCUGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 122567 0.73 0.691923
Target:  5'- aCCGAAGCCUGCaCCgAAGCCUGCn- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.