Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
780 | 5' | -57.1 | NC_000852.3 | + | 197501 | 1.09 | 0.005262 |
Target: 5'- cUCCGAAACCCGCUCCUAAGCCCGCUCc -3' miRNA: 3'- -AGGCUUUGGGCGAGGAUUCGGGCGAG- -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 76232 | 0.92 | 0.059503 |
Target: 5'- cUCCuAAACCCGCUCCUAAGCCCGCa- -3' miRNA: 3'- -AGGcUUUGGGCGAGGAUUCGGGCGag -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 158487 | 0.9 | 0.078728 |
Target: 5'- aCCGAAGCCaGCUCCUAAGCCCGCa- -3' miRNA: 3'- aGGCUUUGGgCGAGGAUUCGGGCGag -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 197465 | 0.89 | 0.091592 |
Target: 5'- cUCCGAAACCCGCUCCgaaaCCCGCUCc -3' miRNA: 3'- -AGGCUUUGGGCGAGGauucGGGCGAG- -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 197346 | 0.87 | 0.119315 |
Target: 5'- aCCGAAACCCGCUCCgaaaccugcaccgAAGCCCGCa- -3' miRNA: 3'- aGGCUUUGGGCGAGGa------------UUCGGGCGag -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 197298 | 0.87 | 0.120501 |
Target: 5'- aCCGAAACCCGCaCCUAAGCCUGCa- -3' miRNA: 3'- aGGCUUUGGGCGaGGAUUCGGGCGag -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 158379 | 0.86 | 0.153938 |
Target: 5'- aCCGAAACCCGCUCCUAAaCCUGCa- -3' miRNA: 3'- aGGCUUUGGGCGAGGAUUcGGGCGag -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 197550 | 0.83 | 0.20986 |
Target: 5'- aCCGAAACCCGCaCCaAAGCCCGCa- -3' miRNA: 3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 197382 | 0.83 | 0.228186 |
Target: 5'- aCCGAAACCCGCUCCgaaaccugcaccgAAGUCCGCa- -3' miRNA: 3'- aGGCUUUGGGCGAGGa------------UUCGGGCGag -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 158427 | 0.81 | 0.29523 |
Target: 5'- gCCGAAACCCGUaccaaggCCUAAGCCUGCa- -3' miRNA: 3'- aGGCUUUGGGCGa------GGAUUCGGGCGag -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 158271 | 0.8 | 0.322145 |
Target: 5'- aCCGAAGCCCGCUCCcAAaCCCGCc- -3' miRNA: 3'- aGGCUUUGGGCGAGGaUUcGGGCGag -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 158331 | 0.8 | 0.343507 |
Target: 5'- aCCGAAACCCGCUCCUAAaCCCa--- -3' miRNA: 3'- aGGCUUUGGGCGAGGAUUcGGGcgag -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 197430 | 0.8 | 0.343507 |
Target: 5'- aCCGAAACCUGCaCCgAAGCCCGCa- -3' miRNA: 3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 122591 | 0.8 | 0.343507 |
Target: 5'- aCCGAAGCCUGCaCCgAAGCCCGCg- -3' miRNA: 3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 189165 | 0.79 | 0.350851 |
Target: 5'- aCCGAAACCCGCcCCUAAaCCCGCc- -3' miRNA: 3'- aGGCUUUGGGCGaGGAUUcGGGCGag -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 24308 | 0.79 | 0.350851 |
Target: 5'- gCCGAAACCUGCUCCcAAaCCUGCUCc -3' miRNA: 3'- aGGCUUUGGGCGAGGaUUcGGGCGAG- -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 76173 | 0.79 | 0.358305 |
Target: 5'- aCCcAAACCCGCUCCUAAaCCCGCa- -3' miRNA: 3'- aGGcUUUGGGCGAGGAUUcGGGCGag -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 122627 | 0.79 | 0.36587 |
Target: 5'- gCCGAAGCCUGCaCCgAAGCCCGCg- -3' miRNA: 3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 197322 | 0.78 | 0.41352 |
Target: 5'- aCCGAAGCCCGCcCCUAAaCCCGCn- -3' miRNA: 3'- aGGCUUUGGGCGaGGAUUcGGGCGag -5' |
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780 | 5' | -57.1 | NC_000852.3 | + | 197238 | 0.77 | 0.438735 |
Target: 5'- gCCGAAACCCGCUCCgaaaCCUGCg- -3' miRNA: 3'- aGGCUUUGGGCGAGGauucGGGCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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