miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
780 5' -57.1 NC_000852.3 + 197501 1.09 0.005262
Target:  5'- cUCCGAAACCCGCUCCUAAGCCCGCUCc -3'
miRNA:   3'- -AGGCUUUGGGCGAGGAUUCGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 197322 0.78 0.41352
Target:  5'- aCCGAAGCCCGCcCCUAAaCCCGCn- -3'
miRNA:   3'- aGGCUUUGGGCGaGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 76137 0.77 0.464807
Target:  5'- cCCuAAACCCGCUCCcAAaCCCGCUCc -3'
miRNA:   3'- aGGcUUUGGGCGAGGaUUcGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 283250 0.66 0.968962
Target:  5'- uUCCGuugcGACCUGCUCC--AGUCCucuGUUCg -3'
miRNA:   3'- -AGGCu---UUGGGCGAGGauUCGGG---CGAG- -5'
780 5' -57.1 NC_000852.3 + 197346 0.87 0.119315
Target:  5'- aCCGAAACCCGCUCCgaaaccugcaccgAAGCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGAGGa------------UUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 197298 0.87 0.120501
Target:  5'- aCCGAAACCCGCaCCUAAGCCUGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGAUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 197550 0.83 0.20986
Target:  5'- aCCGAAACCCGCaCCaAAGCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 197382 0.83 0.228186
Target:  5'- aCCGAAACCCGCUCCgaaaccugcaccgAAGUCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGAGGa------------UUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 122591 0.8 0.343507
Target:  5'- aCCGAAGCCUGCaCCgAAGCCCGCg- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 122627 0.79 0.36587
Target:  5'- gCCGAAGCCUGCaCCgAAGCCCGCg- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 197430 0.8 0.343507
Target:  5'- aCCGAAACCUGCaCCgAAGCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 158271 0.8 0.322145
Target:  5'- aCCGAAGCCCGCUCCcAAaCCCGCc- -3'
miRNA:   3'- aGGCUUUGGGCGAGGaUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 76232 0.92 0.059503
Target:  5'- cUCCuAAACCCGCUCCUAAGCCCGCa- -3'
miRNA:   3'- -AGGcUUUGGGCGAGGAUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 24308 0.79 0.350851
Target:  5'- gCCGAAACCUGCUCCcAAaCCUGCUCc -3'
miRNA:   3'- aGGCUUUGGGCGAGGaUUcGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 158487 0.9 0.078728
Target:  5'- aCCGAAGCCaGCUCCUAAGCCCGCa- -3'
miRNA:   3'- aGGCUUUGGgCGAGGAUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 158427 0.81 0.29523
Target:  5'- gCCGAAACCCGUaccaaggCCUAAGCCUGCa- -3'
miRNA:   3'- aGGCUUUGGGCGa------GGAUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 76173 0.79 0.358305
Target:  5'- aCCcAAACCCGCUCCUAAaCCCGCa- -3'
miRNA:   3'- aGGcUUUGGGCGAGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 197238 0.77 0.438735
Target:  5'- gCCGAAACCCGCUCCgaaaCCUGCg- -3'
miRNA:   3'- aGGCUUUGGGCGAGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 197465 0.89 0.091592
Target:  5'- cUCCGAAACCCGCUCCgaaaCCCGCUCc -3'
miRNA:   3'- -AGGCUUUGGGCGAGGauucGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 158379 0.86 0.153938
Target:  5'- aCCGAAACCCGCUCCUAAaCCUGCa- -3'
miRNA:   3'- aGGCUUUGGGCGAGGAUUcGGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.