miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
780 5' -57.1 NC_000852.3 + 76209 0.7 0.817938
Target:  5'- aCCcAAACCCGCUCCUAAaCCCGn-- -3'
miRNA:   3'- aGGcUUUGGGCGAGGAUUcGGGCgag -5'
780 5' -57.1 NC_000852.3 + 197196 0.71 0.784075
Target:  5'- aCCGAAACCCGUgCCUAuaccgaaaCCCGCg- -3'
miRNA:   3'- aGGCUUUGGGCGaGGAUuc------GGGCGag -5'
780 5' -57.1 NC_000852.3 + 122651 0.73 0.691923
Target:  5'- gCCGAAACCCGCgCCgaaaCCCGCg- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 122543 0.76 0.528534
Target:  5'- aCCGAAGCCUGCaCCgAAGCCUGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 158247 0.67 0.930564
Target:  5'- cCCuAAACCCGCcCCUAAaCCCGCn- -3'
miRNA:   3'- aGGcUUUGGGCGaGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 158295 0.68 0.897397
Target:  5'- cCCuAAACCCGCaaCgAAGCCCGCa- -3'
miRNA:   3'- aGGcUUUGGGCGagGaUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 76257 0.72 0.739046
Target:  5'- aCCGAAACCCGCaCCcAAaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 32170 0.77 0.473676
Target:  5'- cUCCuGAACCCaCUCCUGAaCCCGCUCc -3'
miRNA:   3'- -AGGcUUUGGGcGAGGAUUcGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 75703 0.68 0.897397
Target:  5'- aUCCGuGAACaaaaagaaCGCUCCUAAaCCCGCa- -3'
miRNA:   3'- -AGGC-UUUGg-------GCGAGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 76137 0.77 0.464807
Target:  5'- cCCuAAACCCGCUCCcAAaCCCGCUCc -3'
miRNA:   3'- aGGcUUUGGGCGAGGaUUcGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 75010 0.71 0.775284
Target:  5'- ---uAAACCCGCUCCcAAaCCCGCUCc -3'
miRNA:   3'- aggcUUUGGGCGAGGaUUcGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 122711 0.7 0.849377
Target:  5'- aCCGAAACCCGCaCCgAAGCCUa--- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGcgag -5'
780 5' -57.1 NC_000852.3 + 122567 0.73 0.691923
Target:  5'- aCCGAAGCCUGCaCCgAAGCCUGCn- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 122675 0.73 0.691923
Target:  5'- gCCGAAACCCGCgCCgaaaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 273637 0.74 0.633973
Target:  5'- aCCGGGACCUGCUCCUGuGCCgagaccgagCGCg- -3'
miRNA:   3'- aGGCUUUGGGCGAGGAUuCGG---------GCGag -5'
780 5' -57.1 NC_000852.3 + 24223 0.75 0.56638
Target:  5'- cUCCaAAACCCGCcCCUAaacccgcaccgaAGCCCGUUCc -3'
miRNA:   3'- -AGGcUUUGGGCGaGGAU------------UCGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 283250 0.66 0.968962
Target:  5'- uUCCGuugcGACCUGCUCC--AGUCCucuGUUCg -3'
miRNA:   3'- -AGGCu---UUGGGCGAGGauUCGGG---CGAG- -5'
780 5' -57.1 NC_000852.3 + 132627 0.67 0.935343
Target:  5'- -gCGAAACCUGCUCCguauuauacGAGCCC-Ca- -3'
miRNA:   3'- agGCUUUGGGCGAGGa--------UUCGGGcGag -5'
780 5' -57.1 NC_000852.3 + 158463 0.68 0.909304
Target:  5'- aCCGAAACCCGUgCCaAAGCCUa--- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGcgag -5'
780 5' -57.1 NC_000852.3 + 24332 0.68 0.909304
Target:  5'- nCCcAAACCCGUUCCaAAaCCCGUUCc -3'
miRNA:   3'- aGGcUUUGGGCGAGGaUUcGGGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.