miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7806 3' -53.9 NC_001973.1 + 146790 0.7 0.836666
Target:  5'- gGUGGCGAgCACGCCUuccaccccgccgggCGUGCGGguguuagUGCu -3'
miRNA:   3'- -CGCCGCU-GUGUGGA--------------GCAUGUCa------ACGc -5'
7806 3' -53.9 NC_001973.1 + 145019 0.66 0.974487
Target:  5'- cCGGCGGCGC-CCgaGUGCGGc-GCGa -3'
miRNA:   3'- cGCCGCUGUGuGGagCAUGUCaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 135935 0.67 0.951107
Target:  5'- cGCGGCGaugGCGCGCCaaGUGCgccaAGUgGCa -3'
miRNA:   3'- -CGCCGC---UGUGUGGagCAUG----UCAaCGc -5'
7806 3' -53.9 NC_001973.1 + 134083 0.66 0.971779
Target:  5'- gGUGGCGAC-CGCUcggUCGgcCAGguucgGCGg -3'
miRNA:   3'- -CGCCGCUGuGUGG---AGCauGUCaa---CGC- -5'
7806 3' -53.9 NC_001973.1 + 132546 0.7 0.855136
Target:  5'- cGCGGCGGCGgGCUcgagCGcgGCGGUgugGCGc -3'
miRNA:   3'- -CGCCGCUGUgUGGa---GCa-UGUCAa--CGC- -5'
7806 3' -53.9 NC_001973.1 + 124310 0.71 0.777586
Target:  5'- uCGGCGGCACGCgCUCGaGCgAGcUGCa -3'
miRNA:   3'- cGCCGCUGUGUG-GAGCaUG-UCaACGc -5'
7806 3' -53.9 NC_001973.1 + 124203 0.7 0.839133
Target:  5'- cGCGGCGGCGCGCCggcUCGUgaccgacuACGGccagGCc -3'
miRNA:   3'- -CGCCGCUGUGUGG---AGCA--------UGUCaa--CGc -5'
7806 3' -53.9 NC_001973.1 + 121741 0.77 0.478618
Target:  5'- uGCGGCGGCACgACCUC--ACGGUgaucuUGCGg -3'
miRNA:   3'- -CGCCGCUGUG-UGGAGcaUGUCA-----ACGC- -5'
7806 3' -53.9 NC_001973.1 + 121590 0.68 0.922167
Target:  5'- cGCGGCGAC-CGCgUCGauCAGcgUGUGa -3'
miRNA:   3'- -CGCCGCUGuGUGgAGCauGUCa-ACGC- -5'
7806 3' -53.9 NC_001973.1 + 121305 0.66 0.971779
Target:  5'- cGCGGCG-CGCGCCg---GCGGacGCGc -3'
miRNA:   3'- -CGCCGCuGUGUGGagcaUGUCaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 121235 0.7 0.830844
Target:  5'- cGCGGCGGCGCGgCgCGUcgcagaACAGggugGCGa -3'
miRNA:   3'- -CGCCGCUGUGUgGaGCA------UGUCaa--CGC- -5'
7806 3' -53.9 NC_001973.1 + 109371 0.72 0.749073
Target:  5'- aGCGGuCGACgaGCGCCUCGU--AGgcGCGg -3'
miRNA:   3'- -CGCC-GCUG--UGUGGAGCAugUCaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 109127 0.66 0.95851
Target:  5'- cGCGGCGGCGgccucuugggcgcCGCCUCG-ACgAGccggGCGa -3'
miRNA:   3'- -CGCCGCUGU-------------GUGGAGCaUG-UCaa--CGC- -5'
7806 3' -53.9 NC_001973.1 + 109028 0.66 0.974487
Target:  5'- aGCGuCGGCucgucCACCUCGUcuCGGUUGuCGg -3'
miRNA:   3'- -CGCcGCUGu----GUGGAGCAu-GUCAAC-GC- -5'
7806 3' -53.9 NC_001973.1 + 104359 0.66 0.96887
Target:  5'- gGCGGCGACgaucaagcggGCGuCCUCGUccagcucgaccACGauggacuuGUUGCGg -3'
miRNA:   3'- -CGCCGCUG----------UGU-GGAGCA-----------UGU--------CAACGC- -5'
7806 3' -53.9 NC_001973.1 + 103958 0.7 0.839133
Target:  5'- cGCGGCGccaGCAgccuaGCCggggCGUGCcGUUGCGa -3'
miRNA:   3'- -CGCCGC---UGUg----UGGa---GCAUGuCAACGC- -5'
7806 3' -53.9 NC_001973.1 + 102642 0.68 0.910608
Target:  5'- gGCGcGCGACuggcaaACGCgCUCGUGcCAGgUGCGc -3'
miRNA:   3'- -CGC-CGCUG------UGUG-GAGCAU-GUCaACGC- -5'
7806 3' -53.9 NC_001973.1 + 101968 0.69 0.898099
Target:  5'- gGCGGCGACgaugcGCGCCagcguguccgUGUGCucGUUGCGc -3'
miRNA:   3'- -CGCCGCUG-----UGUGGa---------GCAUGu-CAACGC- -5'
7806 3' -53.9 NC_001973.1 + 98346 0.66 0.971779
Target:  5'- gGCGGCGGCGCGCgUUCGgccgcuuuCGGgcuuUGCc -3'
miRNA:   3'- -CGCCGCUGUGUG-GAGCau------GUCa---ACGc -5'
7806 3' -53.9 NC_001973.1 + 98115 0.67 0.955106
Target:  5'- aCGGUGGCGCACgUCG-ACGaugGCGg -3'
miRNA:   3'- cGCCGCUGUGUGgAGCaUGUcaaCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.