miRNA display CGI


Results 41 - 60 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7806 5' -58.2 NC_001973.1 + 6429 0.67 0.814889
Target:  5'- cGCGcCGACgagCGCGccCgUCGCCGgaGCCg -3'
miRNA:   3'- aCGC-GUUGa--GCGCuaG-AGCGGCg-CGG- -5'
7806 5' -58.2 NC_001973.1 + 62518 0.67 0.814038
Target:  5'- gUGaCGCAcucGCUCGCccgcaccGAUCUCGCCGaCuaCu -3'
miRNA:   3'- -AC-GCGU---UGAGCG-------CUAGAGCGGC-GcgG- -5'
7806 5' -58.2 NC_001973.1 + 28111 0.67 0.806317
Target:  5'- aGCGaCGACUgaaCGCGAUcCUCcUCGaCGCCg -3'
miRNA:   3'- aCGC-GUUGA---GCGCUA-GAGcGGC-GCGG- -5'
7806 5' -58.2 NC_001973.1 + 119843 0.67 0.806317
Target:  5'- gGCGCAugccCUUGUaguagaacuuGGUUUCGUCGuCGCCg -3'
miRNA:   3'- aCGCGUu---GAGCG----------CUAGAGCGGC-GCGG- -5'
7806 5' -58.2 NC_001973.1 + 134166 0.67 0.806317
Target:  5'- cGUGCGGC-----AUCUUGCUGCGCCa -3'
miRNA:   3'- aCGCGUUGagcgcUAGAGCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 40801 0.67 0.806317
Target:  5'- aGCGCGAUcgaagCGUGAUCUCaUCGgGCg -3'
miRNA:   3'- aCGCGUUGa----GCGCUAGAGcGGCgCGg -5'
7806 5' -58.2 NC_001973.1 + 69436 0.67 0.806317
Target:  5'- uUGCGCGuCUCGUGGUCggucaGCgG-GCCc -3'
miRNA:   3'- -ACGCGUuGAGCGCUAGag---CGgCgCGG- -5'
7806 5' -58.2 NC_001973.1 + 73603 0.67 0.806317
Target:  5'- aGCGCGACccggGCGAUCaguucggacggcUCGCCGU-CCg -3'
miRNA:   3'- aCGCGUUGag--CGCUAG------------AGCGGCGcGG- -5'
7806 5' -58.2 NC_001973.1 + 107260 0.67 0.806317
Target:  5'- cGCGCGGCgcgUCGCuuGAcCUCGUucgucaacaugUGCGCCg -3'
miRNA:   3'- aCGCGUUG---AGCG--CUaGAGCG-----------GCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 120594 0.67 0.806317
Target:  5'- cGCGcCGAgUCGCGGUg-CGCCuuccaCGCCg -3'
miRNA:   3'- aCGC-GUUgAGCGCUAgaGCGGc----GCGG- -5'
7806 5' -58.2 NC_001973.1 + 124469 0.67 0.806317
Target:  5'- cGUGCAAauucaUCGCGcgCgucaaCGcCCGCGCUc -3'
miRNA:   3'- aCGCGUUg----AGCGCuaGa----GC-GGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 8408 0.67 0.806317
Target:  5'- gGCGCugggCGCGAaCggcaagagcCGCCGCGUCg -3'
miRNA:   3'- aCGCGuugaGCGCUaGa--------GCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 73641 0.67 0.806317
Target:  5'- cGCGC-GCUCGuCGcaCUCGUUgagGCGCCg -3'
miRNA:   3'- aCGCGuUGAGC-GCuaGAGCGG---CGCGG- -5'
7806 5' -58.2 NC_001973.1 + 92633 0.67 0.805451
Target:  5'- aGCGCuGgUCGCGAcccucccUCcCGCUGCucGCCa -3'
miRNA:   3'- aCGCGuUgAGCGCU-------AGaGCGGCG--CGG- -5'
7806 5' -58.2 NC_001973.1 + 16190 0.67 0.797594
Target:  5'- gGCGCAggccGCUagaGCGcgCUgCGCguucaGCGCCa -3'
miRNA:   3'- aCGCGU----UGAg--CGCuaGA-GCGg----CGCGG- -5'
7806 5' -58.2 NC_001973.1 + 118444 0.67 0.797594
Target:  5'- aGCGCAAg-CGCGAcaaauggCGCC-CGCCg -3'
miRNA:   3'- aCGCGUUgaGCGCUaga----GCGGcGCGG- -5'
7806 5' -58.2 NC_001973.1 + 21553 0.67 0.797594
Target:  5'- gGCGCGccguggucccgGCgCGCGGgguugaagugCUCGCCG-GCCg -3'
miRNA:   3'- aCGCGU-----------UGaGCGCUa---------GAGCGGCgCGG- -5'
7806 5' -58.2 NC_001973.1 + 42075 0.67 0.788729
Target:  5'- cUGCGC-GC-CGCGGUgcgCUCGUCcgagauaaGCGCCg -3'
miRNA:   3'- -ACGCGuUGaGCGCUA---GAGCGG--------CGCGG- -5'
7806 5' -58.2 NC_001973.1 + 17274 0.67 0.788729
Target:  5'- cGCGC-ACUCGgGcAUCgCGUCGUacGCCg -3'
miRNA:   3'- aCGCGuUGAGCgC-UAGaGCGGCG--CGG- -5'
7806 5' -58.2 NC_001973.1 + 10316 0.67 0.788729
Target:  5'- cGCGCAGCgcaGCGGgcgCUCGuuGagGUCg -3'
miRNA:   3'- aCGCGUUGag-CGCUa--GAGCggCg-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.