miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7806 5' -58.2 NC_001973.1 + 28264 1.11 0.00143
Target:  5'- gUGCGCAACUCGCGAUCUCGCCGCGCCu -3'
miRNA:   3'- -ACGCGUUGAGCGCUAGAGCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 47961 0.81 0.153861
Target:  5'- aGUGCAACUgcgaCGCGAggCUCGgCGCGCCg -3'
miRNA:   3'- aCGCGUUGA----GCGCUa-GAGCgGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 126646 0.8 0.192179
Target:  5'- cGCGCGGcCUCGCaAUCUUGUCGCGCg -3'
miRNA:   3'- aCGCGUU-GAGCGcUAGAGCGGCGCGg -5'
7806 5' -58.2 NC_001973.1 + 104773 0.79 0.206207
Target:  5'- cGCGCcgaauccGACUCGCGA-UUCGCCGUGCg -3'
miRNA:   3'- aCGCG-------UUGAGCGCUaGAGCGGCGCGg -5'
7806 5' -58.2 NC_001973.1 + 121948 0.79 0.211755
Target:  5'- aGCGCAGCaaUCGCuuUCUCGacgaCGCGCCa -3'
miRNA:   3'- aCGCGUUG--AGCGcuAGAGCg---GCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 31969 0.79 0.222172
Target:  5'- aGCGCAcCUCGggcugcgcgcCGAUCUcCGCCGCGCUc -3'
miRNA:   3'- aCGCGUuGAGC----------GCUAGA-GCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 132461 0.78 0.238613
Target:  5'- gGCGCGGcCUCGuCGggCUCGCCGCGaUCa -3'
miRNA:   3'- aCGCGUU-GAGC-GCuaGAGCGGCGC-GG- -5'
7806 5' -58.2 NC_001973.1 + 158382 0.78 0.256059
Target:  5'- cGCGcCGACUCGUccGAUCgCGCCcGCGCCc -3'
miRNA:   3'- aCGC-GUUGAGCG--CUAGaGCGG-CGCGG- -5'
7806 5' -58.2 NC_001973.1 + 137856 0.77 0.262102
Target:  5'- gGCGCAGCUcuuugcucagCGCGGUCaggGCCGCGUCg -3'
miRNA:   3'- aCGCGUUGA----------GCGCUAGag-CGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 2892 0.77 0.262102
Target:  5'- cGCGCGucgUCGCGcuuugCUCGCCGCGCg -3'
miRNA:   3'- aCGCGUug-AGCGCua---GAGCGGCGCGg -5'
7806 5' -58.2 NC_001973.1 + 52857 0.77 0.274536
Target:  5'- cGCGCGGC-CGguCGGUCcagcuggCGCCGCGCCg -3'
miRNA:   3'- aCGCGUUGaGC--GCUAGa------GCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 23908 0.76 0.294066
Target:  5'- cGCGCAACgugacgcugaCGCGG-CUCGaCUGCGCCg -3'
miRNA:   3'- aCGCGUUGa---------GCGCUaGAGC-GGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 157880 0.76 0.294066
Target:  5'- cGCuGCGGCUCGUgucggaGGUCgcggcCGCCGCGCCc -3'
miRNA:   3'- aCG-CGUUGAGCG------CUAGa----GCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 36501 0.76 0.300812
Target:  5'- cGCGCAGCgcgagauaGCGAgCUaccaCGCCGCGCCc -3'
miRNA:   3'- aCGCGUUGag------CGCUaGA----GCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 7813 0.76 0.310457
Target:  5'- cGCGCAgcGCUUGCGcucUCUguugagaacgggcggCGCCGCGCCc -3'
miRNA:   3'- aCGCGU--UGAGCGCu--AGA---------------GCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 136738 0.76 0.314662
Target:  5'- cGCGCGAUgucgaGCG-UCUCGUCGCGCa -3'
miRNA:   3'- aCGCGUUGag---CGCuAGAGCGGCGCGg -5'
7806 5' -58.2 NC_001973.1 + 109180 0.76 0.314662
Target:  5'- cGCGC-GCUCGcCGAgcgCGCCGCGCa -3'
miRNA:   3'- aCGCGuUGAGC-GCUagaGCGGCGCGg -5'
7806 5' -58.2 NC_001973.1 + 27880 0.76 0.328988
Target:  5'- gGCGCGGg-CGCGcUCUCGCCGCGaCUc -3'
miRNA:   3'- aCGCGUUgaGCGCuAGAGCGGCGC-GG- -5'
7806 5' -58.2 NC_001973.1 + 39948 0.75 0.33633
Target:  5'- aGCGCAACUCGCGca---GCCccgGCGCCu -3'
miRNA:   3'- aCGCGUUGAGCGCuagagCGG---CGCGG- -5'
7806 5' -58.2 NC_001973.1 + 86731 0.75 0.3393
Target:  5'- cUGCGCGGCgacgaacggcggcgCGCGGcCUCGuuCCGCGCCu -3'
miRNA:   3'- -ACGCGUUGa-------------GCGCUaGAGC--GGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.