miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7806 5' -58.2 NC_001973.1 + 539 0.68 0.742547
Target:  5'- gUGCGcCAAUUCGCGAaaaCUCGCgucccCGCCc -3'
miRNA:   3'- -ACGC-GUUGAGCGCUa--GAGCGgc---GCGG- -5'
7806 5' -58.2 NC_001973.1 + 2892 0.77 0.262102
Target:  5'- cGCGCGucgUCGCGcuuugCUCGCCGCGCg -3'
miRNA:   3'- aCGCGUug-AGCGCua---GAGCGGCGCGg -5'
7806 5' -58.2 NC_001973.1 + 4152 0.66 0.831549
Target:  5'- gGCGauuaaguACUCGgugGGUCcgUCGCCGCGCa -3'
miRNA:   3'- aCGCgu-----UGAGCg--CUAG--AGCGGCGCGg -5'
7806 5' -58.2 NC_001973.1 + 4318 0.68 0.732999
Target:  5'- aGCGCGcccagcccgcGCUCGaCGAccUCUCGgCG-GCCg -3'
miRNA:   3'- aCGCGU----------UGAGC-GCU--AGAGCgGCgCGG- -5'
7806 5' -58.2 NC_001973.1 + 5056 0.66 0.836414
Target:  5'- aGCGCAGCgucaagcgggggaCGCGcgCggCGuuGCGCa -3'
miRNA:   3'- aCGCGUUGa------------GCGCuaGa-GCggCGCGg -5'
7806 5' -58.2 NC_001973.1 + 5843 0.69 0.674259
Target:  5'- cGCGUcgUUCgGCGAg--CGCaCGCGCCg -3'
miRNA:   3'- aCGCGuuGAG-CGCUagaGCG-GCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 5890 0.68 0.720464
Target:  5'- gGCGCAGCgcgCGCGAcgcgaacgagauccUCgCGUCGC-CCg -3'
miRNA:   3'- aCGCGUUGa--GCGCU--------------AGaGCGGCGcGG- -5'
7806 5' -58.2 NC_001973.1 + 6107 0.71 0.535326
Target:  5'- gUGCGCAugACggcgCGCGAgggCGCCGCgauacGCCg -3'
miRNA:   3'- -ACGCGU--UGa---GCGCUagaGCGGCG-----CGG- -5'
7806 5' -58.2 NC_001973.1 + 6429 0.67 0.814889
Target:  5'- cGCGcCGACgagCGCGccCgUCGCCGgaGCCg -3'
miRNA:   3'- aCGC-GUUGa--GCGCuaG-AGCGGCg-CGG- -5'
7806 5' -58.2 NC_001973.1 + 6895 0.66 0.85825
Target:  5'- aGCGCcacACUCGCGGccaguccaagaacgCgcuguggaacgCGCUGCGCCu -3'
miRNA:   3'- aCGCGu--UGAGCGCUa-------------Ga----------GCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 7259 0.68 0.723368
Target:  5'- aUGCGCAgcggGCUCG-GcgCgCGgCGCGCCc -3'
miRNA:   3'- -ACGCGU----UGAGCgCuaGaGCgGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 7617 0.74 0.424762
Target:  5'- cGCGCAcgcccgagcaGCUgCGCGcgCUCGCCGCcaGCg -3'
miRNA:   3'- aCGCGU----------UGA-GCGCuaGAGCGGCG--CGg -5'
7806 5' -58.2 NC_001973.1 + 7813 0.76 0.310457
Target:  5'- cGCGCAgcGCUUGCGcucUCUguugagaacgggcggCGCCGCGCCc -3'
miRNA:   3'- aCGCGU--UGAGCGCu--AGA---------------GCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 7929 0.68 0.742547
Target:  5'- aGCGCGugUgCGCGGccggCguggUGCaCGCGCCc -3'
miRNA:   3'- aCGCGUugA-GCGCUa---Ga---GCG-GCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 7966 0.68 0.761357
Target:  5'- gUGCGCGuACgCGCGAUUgUGCgCGCGUa -3'
miRNA:   3'- -ACGCGU-UGaGCGCUAGaGCG-GCGCGg -5'
7806 5' -58.2 NC_001973.1 + 8408 0.67 0.806317
Target:  5'- gGCGCugggCGCGAaCggcaagagcCGCCGCGUCg -3'
miRNA:   3'- aCGCGuugaGCGCUaGa--------GCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 8575 0.68 0.742547
Target:  5'- cGCGCAagguuugcaagaGCcgCGCGAgaaagccggCg-GCCGCGCCg -3'
miRNA:   3'- aCGCGU------------UGa-GCGCUa--------GagCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 9074 0.69 0.654326
Target:  5'- uUGUGCAGCcugUCGCGccgcgugagCUCGgcgcgcauCCGCGCCg -3'
miRNA:   3'- -ACGCGUUG---AGCGCua-------GAGC--------GGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 10249 0.68 0.742547
Target:  5'- cGCGCAGCggGCGGcaguacggagUUUgCGUCGCGUCg -3'
miRNA:   3'- aCGCGUUGagCGCU----------AGA-GCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 10316 0.67 0.788729
Target:  5'- cGCGCAGCgcaGCGGgcgCUCGuuGagGUCg -3'
miRNA:   3'- aCGCGUUGag-CGCUa--GAGCggCg-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.