miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7814 3' -65.5 NC_001973.1 + 24151 1.12 0.000295
Target:  5'- gCCGCCCGCCUCGGCGCUGGCGCUGCCg -3'
miRNA:   3'- -GGCGGGCGGAGCCGCGACCGCGACGG- -5'
7814 3' -65.5 NC_001973.1 + 8832 0.8 0.065468
Target:  5'- cCCGCCCGCCguccCGcGCuGCUGGCGCgGCg -3'
miRNA:   3'- -GGCGGGCGGa---GC-CG-CGACCGCGaCGg -5'
7814 3' -65.5 NC_001973.1 + 16179 0.77 0.112786
Target:  5'- gCGCCCGUgUCGGCGCaGGCcgcuagagcgcGCUGCg -3'
miRNA:   3'- gGCGGGCGgAGCCGCGaCCG-----------CGACGg -5'
7814 3' -65.5 NC_001973.1 + 48391 0.76 0.11841
Target:  5'- aCCGCCCGaCagUCGGCGCUGaGC-CUGCUc -3'
miRNA:   3'- -GGCGGGC-Gg-AGCCGCGAC-CGcGACGG- -5'
7814 3' -65.5 NC_001973.1 + 77376 0.75 0.135899
Target:  5'- gCGCCCGCgCgcCGGCGCcgacguuuuggugaUGGCGCUGUUg -3'
miRNA:   3'- gGCGGGCG-Ga-GCCGCG--------------ACCGCGACGG- -5'
7814 3' -65.5 NC_001973.1 + 21534 0.75 0.147082
Target:  5'- gUGCCUGaUCUCGGCGUcgGGCGC-GCCg -3'
miRNA:   3'- gGCGGGC-GGAGCCGCGa-CCGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 47751 0.74 0.160994
Target:  5'- gCCGCCCGgcggaaucacggccuCCUCGGCGCUccucagguccaggccGGCcGCgccgGCCg -3'
miRNA:   3'- -GGCGGGC---------------GGAGCCGCGA---------------CCG-CGa---CGG- -5'
7814 3' -65.5 NC_001973.1 + 95747 0.74 0.169182
Target:  5'- gCGCCCGCCgacaagaucgugcUCGGCGUggccauguacgGGCGCgGCUg -3'
miRNA:   3'- gGCGGGCGG-------------AGCCGCGa----------CCGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 42593 0.74 0.169581
Target:  5'- gUGCUCGCCaaggaggugCGGCGCgagGGCGCggucGCCa -3'
miRNA:   3'- gGCGGGCGGa--------GCCGCGa--CCGCGa---CGG- -5'
7814 3' -65.5 NC_001973.1 + 118463 0.74 0.173618
Target:  5'- gCGCCCGCCgucgUCGGCGCgucccaacuacgUGGCgGCgacucGCCa -3'
miRNA:   3'- gGCGGGCGG----AGCCGCG------------ACCG-CGa----CGG- -5'
7814 3' -65.5 NC_001973.1 + 113562 0.73 0.186247
Target:  5'- gCGCCaucagcagggCGCUUuugcCGGUGCcGGCGCUGCCg -3'
miRNA:   3'- gGCGG----------GCGGA----GCCGCGaCCGCGACGG- -5'
7814 3' -65.5 NC_001973.1 + 23203 0.73 0.193308
Target:  5'- aCGCgCGCCgacgagcgcgcagUGGCGCagggccUGGCGCUGCUg -3'
miRNA:   3'- gGCGgGCGGa------------GCCGCG------ACCGCGACGG- -5'
7814 3' -65.5 NC_001973.1 + 45868 0.73 0.19511
Target:  5'- gCGCgCGCucCUCGGcCGC-GGCGCUGCUc -3'
miRNA:   3'- gGCGgGCG--GAGCC-GCGaCCGCGACGG- -5'
7814 3' -65.5 NC_001973.1 + 53849 0.73 0.199678
Target:  5'- -aGCUCGCCcCGGCgGCggcGGCGCcGCCg -3'
miRNA:   3'- ggCGGGCGGaGCCG-CGa--CCGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 10454 0.73 0.203869
Target:  5'- cCCGCCCGUCUCGGCcagcaGCcacacgcccgugcUGGgGUUGCa -3'
miRNA:   3'- -GGCGGGCGGAGCCG-----CG-------------ACCgCGACGg -5'
7814 3' -65.5 NC_001973.1 + 56207 0.72 0.213946
Target:  5'- uUCGUCgGCgUCGGCGCcgGGCGCgaUGCg -3'
miRNA:   3'- -GGCGGgCGgAGCCGCGa-CCGCG--ACGg -5'
7814 3' -65.5 NC_001973.1 + 59720 0.72 0.213946
Target:  5'- gCGCCUGUUUCGGCuGCUGuGCGacaacgGCCa -3'
miRNA:   3'- gGCGGGCGGAGCCG-CGAC-CGCga----CGG- -5'
7814 3' -65.5 NC_001973.1 + 70108 0.72 0.218892
Target:  5'- gCGCgaaCGCCUCGGCGCccgcGGCGaUGUCg -3'
miRNA:   3'- gGCGg--GCGGAGCCGCGa---CCGCgACGG- -5'
7814 3' -65.5 NC_001973.1 + 7853 0.72 0.223937
Target:  5'- gCGCCCGUCgagcUGGCGCgccagGGCGCguuuugcaacGCCg -3'
miRNA:   3'- gGCGGGCGGa---GCCGCGa----CCGCGa---------CGG- -5'
7814 3' -65.5 NC_001973.1 + 106960 0.72 0.229079
Target:  5'- gCGCCgggCGCgCUCGGCGUgcgcGCGCUGCa -3'
miRNA:   3'- gGCGG---GCG-GAGCCGCGac--CGCGACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.