miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7814 3' -65.5 NC_001973.1 + 1233 0.66 0.510331
Target:  5'- gCCGCCCaaGgCUCcGCGCaaGGCGCcGUCg -3'
miRNA:   3'- -GGCGGG--CgGAGcCGCGa-CCGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 2606 0.68 0.407476
Target:  5'- aCCGCCCGaagaaaaCUaaGCGCcGGCcGCgGCCg -3'
miRNA:   3'- -GGCGGGCg------GAgcCGCGaCCG-CGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 4227 0.66 0.500417
Target:  5'- gCGCCUGCC--GGCGCUcguuugcgugagcGGCGCguacgcgaacaGCCg -3'
miRNA:   3'- gGCGGGCGGagCCGCGA-------------CCGCGa----------CGG- -5'
7814 3' -65.5 NC_001973.1 + 5751 0.66 0.492368
Target:  5'- gCCGCCgaagcgGCCcaCGGCGCUacGCGCgucGCCg -3'
miRNA:   3'- -GGCGGg-----CGGa-GCCGCGAc-CGCGa--CGG- -5'
7814 3' -65.5 NC_001973.1 + 5924 0.66 0.528562
Target:  5'- gUCGCCCGCggUCGcGCGCacgauGCGCgacgcgGCCg -3'
miRNA:   3'- -GGCGGGCGg-AGC-CGCGac---CGCGa-----CGG- -5'
7814 3' -65.5 NC_001973.1 + 6207 0.66 0.501315
Target:  5'- aCCGgCgGCg-CGGUGCcGGCGCggcGCCc -3'
miRNA:   3'- -GGCgGgCGgaGCCGCGaCCGCGa--CGG- -5'
7814 3' -65.5 NC_001973.1 + 6499 0.66 0.510331
Target:  5'- gCUGuaCCgGCUgggCGGCGCgGGCG-UGCCg -3'
miRNA:   3'- -GGC--GGgCGGa--GCCGCGaCCGCgACGG- -5'
7814 3' -65.5 NC_001973.1 + 6936 0.66 0.528562
Target:  5'- gCGCUgCGCCUggacCGGCGCacGGCcuccgGCUGCUc -3'
miRNA:   3'- gGCGG-GCGGA----GCCGCGa-CCG-----CGACGG- -5'
7814 3' -65.5 NC_001973.1 + 7261 0.67 0.448815
Target:  5'- gCGCagCgGgCUCGGCGCgcGGCGC-GCCc -3'
miRNA:   3'- gGCG--GgCgGAGCCGCGa-CCGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 7565 0.66 0.509427
Target:  5'- aCGCaCCGCCUCGccuCGCUgacgaccGGCGC-GCg -3'
miRNA:   3'- gGCG-GGCGGAGCc--GCGA-------CCGCGaCGg -5'
7814 3' -65.5 NC_001973.1 + 7607 0.66 0.528562
Target:  5'- cCCGCCuuuucgcgcaCGCC-CGaGCaGCUGcGCGCgcucGCCg -3'
miRNA:   3'- -GGCGG----------GCGGaGC-CG-CGAC-CGCGa---CGG- -5'
7814 3' -65.5 NC_001973.1 + 7720 0.67 0.447966
Target:  5'- gCCGCCCGCCcgacUgacgcuggagcacCGGUGC-GGCGCgaaCCg -3'
miRNA:   3'- -GGCGGGCGG----A-------------GCCGCGaCCGCGac-GG- -5'
7814 3' -65.5 NC_001973.1 + 7853 0.72 0.223937
Target:  5'- gCGCCCGUCgagcUGGCGCgccagGGCGCguuuugcaacGCCg -3'
miRNA:   3'- gGCGGGCGGa---GCCGCGa----CCGCGa---------CGG- -5'
7814 3' -65.5 NC_001973.1 + 8054 0.7 0.318605
Target:  5'- -gGCUCuCCUCGucGCGCUGGCGCUcgGCg -3'
miRNA:   3'- ggCGGGcGGAGC--CGCGACCGCGA--CGg -5'
7814 3' -65.5 NC_001973.1 + 8389 0.7 0.305288
Target:  5'- aCCGCagCCGCaucuaCUUGGCGCUgGGCGCgaacgGCa -3'
miRNA:   3'- -GGCG--GGCG-----GAGCCGCGA-CCGCGa----CGg -5'
7814 3' -65.5 NC_001973.1 + 8832 0.8 0.065468
Target:  5'- cCCGCCCGCCguccCGcGCuGCUGGCGCgGCg -3'
miRNA:   3'- -GGCGGGCGGa---GC-CG-CGACCGCGaCGg -5'
7814 3' -65.5 NC_001973.1 + 9633 0.67 0.474702
Target:  5'- gCCGCUgGCgUUCGGCuCgagGGCGCgguacaGCCg -3'
miRNA:   3'- -GGCGGgCG-GAGCCGcGa--CCGCGa-----CGG- -5'
7814 3' -65.5 NC_001973.1 + 10454 0.73 0.203869
Target:  5'- cCCGCCCGUCUCGGCcagcaGCcacacgcccgugcUGGgGUUGCa -3'
miRNA:   3'- -GGCGGGCGGAGCCG-----CG-------------ACCgCGACGg -5'
7814 3' -65.5 NC_001973.1 + 10652 0.67 0.465122
Target:  5'- cCUGCaCgGCgUCGGCGUcgcguggcacucgUGcGCGUUGCCc -3'
miRNA:   3'- -GGCG-GgCGgAGCCGCG-------------AC-CGCGACGG- -5'
7814 3' -65.5 NC_001973.1 + 10993 0.66 0.528562
Target:  5'- gCGCUgGCgUucuuggcuaugaUGGCGacCUGGCGCUGCg -3'
miRNA:   3'- gGCGGgCGgA------------GCCGC--GACCGCGACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.