miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7814 5' -53.7 NC_001973.1 + 38512 0.66 0.967607
Target:  5'- cGCGGUgagGCGgcaCAGCG-CGAGGccgucgCAAAGg -3'
miRNA:   3'- -CGCCG---CGCa--GUCGCaGUUCCa-----GUUUC- -5'
7814 5' -53.7 NC_001973.1 + 39429 0.7 0.858682
Target:  5'- -aGGCGCGUC-GCGUCcAGGgCGAc- -3'
miRNA:   3'- cgCCGCGCAGuCGCAGuUCCaGUUuc -5'
7814 5' -53.7 NC_001973.1 + 41147 0.69 0.887991
Target:  5'- gGCGGCG-GUCAGCGggCGAgaggcuucGGUCAc-- -3'
miRNA:   3'- -CGCCGCgCAGUCGCa-GUU--------CCAGUuuc -5'
7814 5' -53.7 NC_001973.1 + 42609 0.67 0.940283
Target:  5'- uGCGGCGCGagGGCGc---GGUCGc-- -3'
miRNA:   3'- -CGCCGCGCagUCGCaguuCCAGUuuc -5'
7814 5' -53.7 NC_001973.1 + 45608 0.71 0.799667
Target:  5'- gGCGgaGCGCGUCGGCGaUCA-GGUCc--- -3'
miRNA:   3'- -CGC--CGCGCAGUCGC-AGUuCCAGuuuc -5'
7814 5' -53.7 NC_001973.1 + 52740 0.7 0.82605
Target:  5'- gGCGGCGCGUCu-CGUCGucGUCGc-- -3'
miRNA:   3'- -CGCCGCGCAGucGCAGUucCAGUuuc -5'
7814 5' -53.7 NC_001973.1 + 56538 0.66 0.973426
Target:  5'- gGCGGgGCGggcUCGGCGcCGAGcUCGAu- -3'
miRNA:   3'- -CGCCgCGC---AGUCGCaGUUCcAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 61681 0.7 0.82605
Target:  5'- cGCGGCGCGaagCGGCGUCGGcGcGcUCGAGc -3'
miRNA:   3'- -CGCCGCGCa--GUCGCAGUU-C-C-AGUUUc -5'
7814 5' -53.7 NC_001973.1 + 62593 0.68 0.907584
Target:  5'- aGCGaCGCGUCGcucgagcgacGCGUCGuGGUCGAc- -3'
miRNA:   3'- -CGCcGCGCAGU----------CGCAGUuCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 68945 0.66 0.973426
Target:  5'- --cGUGC-UCGGCGUCGAGcgcGUCGAAGu -3'
miRNA:   3'- cgcCGCGcAGUCGCAGUUC---CAGUUUC- -5'
7814 5' -53.7 NC_001973.1 + 69427 0.66 0.973426
Target:  5'- cCGGCGuCGUUGcGCGUCucguGGUCGGu- -3'
miRNA:   3'- cGCCGC-GCAGU-CGCAGuu--CCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 71947 0.69 0.876691
Target:  5'- gGCGGacgcguaagaucuuaCGCGUCGGCG--AGGGUCAAu- -3'
miRNA:   3'- -CGCC---------------GCGCAGUCGCagUUCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 72034 0.69 0.876691
Target:  5'- gGCGGacgcguaagauuuuaCGCGUCGGCG--AGGGUCAAu- -3'
miRNA:   3'- -CGCC---------------GCGCAGUCGCagUUCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 72129 0.67 0.953376
Target:  5'- gGCGGaCGCGUaggaucuuacGCGUCGgcaaAGGUCGAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 80079 0.7 0.834496
Target:  5'- uGCGGCGC-UUGGCcgucGUCGAGGUCu--- -3'
miRNA:   3'- -CGCCGCGcAGUCG----CAGUUCCAGuuuc -5'
7814 5' -53.7 NC_001973.1 + 81189 0.66 0.960939
Target:  5'- gGCGGCgGCGaCGGUGUU--GGUCAGc- -3'
miRNA:   3'- -CGCCG-CGCaGUCGCAGuuCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 83449 0.67 0.93544
Target:  5'- cCGGUGCGaCAGCGccgcgcucgUCGAGGagGAGGu -3'
miRNA:   3'- cGCCGCGCaGUCGC---------AGUUCCagUUUC- -5'
7814 5' -53.7 NC_001973.1 + 83941 0.67 0.934942
Target:  5'- aCGGCGCGcCGcucggaggcgggcGCGUCGAGG-CAGcAGg -3'
miRNA:   3'- cGCCGCGCaGU-------------CGCAGUUCCaGUU-UC- -5'
7814 5' -53.7 NC_001973.1 + 90127 0.72 0.733144
Target:  5'- aUGGCGCGUUcacaAGCGUCAAaucgucgucgacGGUCAAu- -3'
miRNA:   3'- cGCCGCGCAG----UCGCAGUU------------CCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 90604 0.69 0.894756
Target:  5'- gGCGGCGUGUCAacaaGUCGucGGUCGc-- -3'
miRNA:   3'- -CGCCGCGCAGUcg--CAGUu-CCAGUuuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.