miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7814 5' -53.7 NC_001973.1 + 2808 0.67 0.953376
Target:  5'- gGCGGaCGCGUaggauuuuacGCGUCGgccgGGGUCGAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 4371 0.67 0.949249
Target:  5'- cGCGGCG-GUCuGGCGcUCcgcgGAGGUCAu-- -3'
miRNA:   3'- -CGCCGCgCAG-UCGC-AG----UUCCAGUuuc -5'
7814 5' -53.7 NC_001973.1 + 6341 0.69 0.887991
Target:  5'- cGCGuCGUGUgCGGCGUCGAGGgggCcGAGc -3'
miRNA:   3'- -CGCcGCGCA-GUCGCAGUUCCa--GuUUC- -5'
7814 5' -53.7 NC_001973.1 + 7272 0.69 0.901288
Target:  5'- uCGGCGCG-CGGCG-CGcccgcuaccGGGUCAAGc -3'
miRNA:   3'- cGCCGCGCaGUCGCaGU---------UCCAGUUUc -5'
7814 5' -53.7 NC_001973.1 + 7763 0.75 0.600385
Target:  5'- cGCGGCgGCGgCGGCGUCGAGGa----- -3'
miRNA:   3'- -CGCCG-CGCaGUCGCAGUUCCaguuuc -5'
7814 5' -53.7 NC_001973.1 + 7896 0.69 0.89409
Target:  5'- cCGGCGCGUUgcaGGCGUucuguugCGAGG-CGGAGc -3'
miRNA:   3'- cGCCGCGCAG---UCGCA-------GUUCCaGUUUC- -5'
7814 5' -53.7 NC_001973.1 + 12120 0.66 0.973426
Target:  5'- gGCGGaCGCGUaggauuuuacGCGUCugccGGGGUCAAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAG----UUCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 12355 0.67 0.940283
Target:  5'- gGCGGaCGCGUaggauuuuacGCGUCGgcaaGGGUCAAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 14017 0.67 0.953376
Target:  5'- gGUGGCGgG-CGGCGUCGGcGUCGc-- -3'
miRNA:   3'- -CGCCGCgCaGUCGCAGUUcCAGUuuc -5'
7814 5' -53.7 NC_001973.1 + 14352 0.66 0.973426
Target:  5'- uUGGCGUgGUCGGCGU---GGUCGAc- -3'
miRNA:   3'- cGCCGCG-CAGUCGCAguuCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 15349 0.66 0.967607
Target:  5'- aGCGGCGCGgcguugCGGUGUCGuacacgaacacGGGcUUGAAa -3'
miRNA:   3'- -CGCCGCGCa-----GUCGCAGU-----------UCC-AGUUUc -5'
7814 5' -53.7 NC_001973.1 + 16368 0.67 0.953376
Target:  5'- gGCGGaCGCGUaggauuuuacGCGUCGgcuaGGGUCGAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 16524 0.67 0.953376
Target:  5'- gGCGGaCGCGUaagauuuuacGCGUCGgcuaGGGUCGAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 20970 0.67 0.940283
Target:  5'- gGCGGaCGCGUaggauuuuacGCGUCGgcuaGGGUCAAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 21069 0.67 0.940283
Target:  5'- gGCgGGCGCGUaggaucuuacGCGUCGgccgGGGUCAAu- -3'
miRNA:   3'- -CG-CCGCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 21167 0.67 0.953376
Target:  5'- gGCGGaCGCGUaggauuuuacGCGUCGgccgGGGUCGAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 21552 0.66 0.964382
Target:  5'- -gGGCGCGccgugguccCGGCGcgCGGGGUUGAAGu -3'
miRNA:   3'- cgCCGCGCa--------GUCGCa-GUUCCAGUUUC- -5'
7814 5' -53.7 NC_001973.1 + 24186 1.12 0.00344
Target:  5'- cGCGGCGCGUCAGCGUCAAGGUCAAAGa -3'
miRNA:   3'- -CGCCGCGCAGUCGCAGUUCCAGUUUC- -5'
7814 5' -53.7 NC_001973.1 + 31875 0.72 0.762377
Target:  5'- gGUGGCGCG-CA-CGUCGguguGGUCGAAGu -3'
miRNA:   3'- -CGCCGCGCaGUcGCAGUu---CCAGUUUC- -5'
7814 5' -53.7 NC_001973.1 + 35687 0.67 0.957272
Target:  5'- gGCGGCGCGguggCGGCGaugcgcgaCGAGGcgCGAu- -3'
miRNA:   3'- -CGCCGCGCa---GUCGCa-------GUUCCa-GUUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.