miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7814 5' -53.7 NC_001973.1 + 24186 1.12 0.00344
Target:  5'- cGCGGCGCGUCAGCGUCAAGGUCAAAGa -3'
miRNA:   3'- -CGCCGCGCAGUCGCAGUUCCAGUUUC- -5'
7814 5' -53.7 NC_001973.1 + 140069 0.77 0.460723
Target:  5'- cGCGGaCGCG-CAGCGUCAccugcucgucgucAGGUCGAu- -3'
miRNA:   3'- -CGCC-GCGCaGUCGCAGU-------------UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 7763 0.75 0.600385
Target:  5'- cGCGGCgGCGgCGGCGUCGAGGa----- -3'
miRNA:   3'- -CGCCG-CGCaGUCGCAGUUCCaguuuc -5'
7814 5' -53.7 NC_001973.1 + 119207 0.74 0.651952
Target:  5'- cGCGGCGgcUCGcccuGCGUCGAGGUCGAc- -3'
miRNA:   3'- -CGCCGCgcAGU----CGCAGUUCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 90127 0.72 0.733144
Target:  5'- aUGGCGCGUUcacaAGCGUCAAaucgucgucgacGGUCAAu- -3'
miRNA:   3'- cGCCGCGCAG----UCGCAGUU------------CCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 109298 0.72 0.74299
Target:  5'- aCGGaGCG-C-GCGUCGGGGUCGAGGa -3'
miRNA:   3'- cGCCgCGCaGuCGCAGUUCCAGUUUC- -5'
7814 5' -53.7 NC_001973.1 + 31875 0.72 0.762377
Target:  5'- gGUGGCGCG-CA-CGUCGguguGGUCGAAGu -3'
miRNA:   3'- -CGCCGCGCaGUcGCAGUu---CCAGUUUC- -5'
7814 5' -53.7 NC_001973.1 + 109875 0.72 0.762377
Target:  5'- cGCGGCGCG-CGGCGUCuacGG-CAc-- -3'
miRNA:   3'- -CGCCGCGCaGUCGCAGuu-CCaGUuuc -5'
7814 5' -53.7 NC_001973.1 + 105364 0.71 0.780361
Target:  5'- aGCGGCGCGgaGGCGUCGGcGGcuugacgagcagcUCGAAGu -3'
miRNA:   3'- -CGCCGCGCagUCGCAGUU-CC-------------AGUUUC- -5'
7814 5' -53.7 NC_001973.1 + 45608 0.71 0.799667
Target:  5'- gGCGgaGCGCGUCGGCGaUCA-GGUCc--- -3'
miRNA:   3'- -CGC--CGCGCAGUCGC-AGUuCCAGuuuc -5'
7814 5' -53.7 NC_001973.1 + 122631 0.71 0.808627
Target:  5'- cGCGG-GCGcCGGCGUC--GGUCGAGa -3'
miRNA:   3'- -CGCCgCGCaGUCGCAGuuCCAGUUUc -5'
7814 5' -53.7 NC_001973.1 + 52740 0.7 0.82605
Target:  5'- gGCGGCGCGUCu-CGUCGucGUCGc-- -3'
miRNA:   3'- -CGCCGCGCAGucGCAGUucCAGUuuc -5'
7814 5' -53.7 NC_001973.1 + 61681 0.7 0.82605
Target:  5'- cGCGGCGCGaagCGGCGUCGGcGcGcUCGAGc -3'
miRNA:   3'- -CGCCGCGCa--GUCGCAGUU-C-C-AGUUUc -5'
7814 5' -53.7 NC_001973.1 + 80079 0.7 0.834496
Target:  5'- uGCGGCGC-UUGGCcgucGUCGAGGUCu--- -3'
miRNA:   3'- -CGCCGCGcAGUCG----CAGUUCCAGuuuc -5'
7814 5' -53.7 NC_001973.1 + 39429 0.7 0.858682
Target:  5'- -aGGCGCGUC-GCGUCcAGGgCGAc- -3'
miRNA:   3'- cgCCGCGCAGuCGCAGuUCCaGUUuc -5'
7814 5' -53.7 NC_001973.1 + 137837 0.7 0.869338
Target:  5'- cGCGGCGCcgccaUCAGCGggcgCAGcucuuugcucagcgcGGUCAGGGc -3'
miRNA:   3'- -CGCCGCGc----AGUCGCa---GUU---------------CCAGUUUC- -5'
7814 5' -53.7 NC_001973.1 + 72034 0.69 0.876691
Target:  5'- gGCGGacgcguaagauuuuaCGCGUCGGCG--AGGGUCAAu- -3'
miRNA:   3'- -CGCC---------------GCGCAGUCGCagUUCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 71947 0.69 0.876691
Target:  5'- gGCGGacgcguaagaucuuaCGCGUCGGCG--AGGGUCAAu- -3'
miRNA:   3'- -CGCC---------------GCGCAGUCGCagUUCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 41147 0.69 0.887991
Target:  5'- gGCGGCG-GUCAGCGggCGAgaggcuucGGUCAc-- -3'
miRNA:   3'- -CGCCGCgCAGUCGCa-GUU--------CCAGUuuc -5'
7814 5' -53.7 NC_001973.1 + 6341 0.69 0.887991
Target:  5'- cGCGuCGUGUgCGGCGUCGAGGgggCcGAGc -3'
miRNA:   3'- -CGCcGCGCA-GUCGCAGUUCCa--GuUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.