miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7817 3' -53.4 NC_001973.1 + 138577 0.67 0.95527
Target:  5'- uUCGGCCaGCGCGccc--UCCggAUGCu -3'
miRNA:   3'- gAGCCGGcCGCGCauuuuAGGa-UGCG- -5'
7817 3' -53.4 NC_001973.1 + 95330 0.67 0.95527
Target:  5'- gUCGaGUCGGCGCGcGAGuUUCUGCa- -3'
miRNA:   3'- gAGC-CGGCCGCGCaUUUuAGGAUGcg -5'
7817 3' -53.4 NC_001973.1 + 45830 0.67 0.951263
Target:  5'- -gUGcGCCGGCGCGgcGuucgugggCCUGgGCg -3'
miRNA:   3'- gaGC-CGGCCGCGCauUuua-----GGAUgCG- -5'
7817 3' -53.4 NC_001973.1 + 120960 0.67 0.947023
Target:  5'- -gCGGCCaGCGCGgcGG--UUUGCGCg -3'
miRNA:   3'- gaGCCGGcCGCGCauUUuaGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 96897 0.67 0.947023
Target:  5'- -gCGGCgGGCGCGUcgGAUCgUucuCGg -3'
miRNA:   3'- gaGCCGgCCGCGCAuuUUAGgAu--GCg -5'
7817 3' -53.4 NC_001973.1 + 69924 0.67 0.947023
Target:  5'- --aGGCCgccgcGGCGCGUGAGcaggccCCUGcCGCg -3'
miRNA:   3'- gagCCGG-----CCGCGCAUUUua----GGAU-GCG- -5'
7817 3' -53.4 NC_001973.1 + 84342 0.68 0.941157
Target:  5'- -cCGGCUGcaggaggacaucgaGCGCGUGAAAgccgaCCUGuCGCg -3'
miRNA:   3'- gaGCCGGC--------------CGCGCAUUUUa----GGAU-GCG- -5'
7817 3' -53.4 NC_001973.1 + 55428 0.68 0.940689
Target:  5'- gUCGGCggcggcgggcccgaCGGCGCGgcGGAUCgUcucgaaccuguccGCGCa -3'
miRNA:   3'- gAGCCG--------------GCCGCGCauUUUAGgA-------------UGCG- -5'
7817 3' -53.4 NC_001973.1 + 134413 0.68 0.93783
Target:  5'- -cCGGCCGGCGUuUGAAAUaCUAUcagaGCg -3'
miRNA:   3'- gaGCCGGCCGCGcAUUUUAgGAUG----CG- -5'
7817 3' -53.4 NC_001973.1 + 123174 0.68 0.93783
Target:  5'- cCUCGucGCCGGCGCGc----UCCaggaACGCg -3'
miRNA:   3'- -GAGC--CGGCCGCGCauuuuAGGa---UGCG- -5'
7817 3' -53.4 NC_001973.1 + 4345 0.68 0.93783
Target:  5'- uCUCGG-CGGC-CGUGAucguauAUCC-ACGCg -3'
miRNA:   3'- -GAGCCgGCCGcGCAUUu-----UAGGaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 151210 0.68 0.93783
Target:  5'- cCUCGGCCGGCG-GUGccGGGUCUg---- -3'
miRNA:   3'- -GAGCCGGCCGCgCAU--UUUAGGaugcg -5'
7817 3' -53.4 NC_001973.1 + 58936 0.68 0.933381
Target:  5'- aUCGcGUCGGuCGUGUucacgggcuucuUCCUGCGCg -3'
miRNA:   3'- gAGC-CGGCC-GCGCAuuuu--------AGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 78437 0.68 0.932874
Target:  5'- --aGGCCGGCGUG-GAGAUggaCCggccGCGCu -3'
miRNA:   3'- gagCCGGCCGCGCaUUUUA---GGa---UGCG- -5'
7817 3' -53.4 NC_001973.1 + 90287 0.68 0.932874
Target:  5'- gCUCGGCCGGUGU------UCaagGCGCa -3'
miRNA:   3'- -GAGCCGGCCGCGcauuuuAGga-UGCG- -5'
7817 3' -53.4 NC_001973.1 + 26545 0.68 0.932874
Target:  5'- gUCGGCCGaGCGCaaccauUCCgaguCGCg -3'
miRNA:   3'- gAGCCGGC-CGCGcauuuuAGGau--GCG- -5'
7817 3' -53.4 NC_001973.1 + 117506 0.68 0.932874
Target:  5'- uUUGGCCgccggcGGCGCGUAGAcuUCCacgGCGg -3'
miRNA:   3'- gAGCCGG------CCGCGCAUUUu-AGGa--UGCg -5'
7817 3' -53.4 NC_001973.1 + 147064 0.68 0.932874
Target:  5'- uUCGuGCCgaucuGGCGCGUGGAGg---GCGCg -3'
miRNA:   3'- gAGC-CGG-----CCGCGCAUUUUaggaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 129654 0.68 0.927676
Target:  5'- aUCGGCCGGUGguCGUgucGAAAgcgaagCCcGCGCu -3'
miRNA:   3'- gAGCCGGCCGC--GCA---UUUUa-----GGaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 124550 0.68 0.924441
Target:  5'- -cCGGCUGGUgguacgacaaguuuuGCGUcgucgCCUACGCg -3'
miRNA:   3'- gaGCCGGCCG---------------CGCAuuuuaGGAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.