miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7817 3' -53.4 NC_001973.1 + 19692 1.13 0.003253
Target:  5'- cCUCGGCCGGCGCGUAAAAUCCUACGCg -3'
miRNA:   3'- -GAGCCGGCCGCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 41082 1.07 0.008176
Target:  5'- -cCGGCCGGCGCGUAAGAUCCUACGCg -3'
miRNA:   3'- gaGCCGGCCGCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 150903 1 0.022868
Target:  5'- gCUCGGCCGaCGCGUAAGAUCCUACGCg -3'
miRNA:   3'- -GAGCCGGCcGCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 21065 1 0.02351
Target:  5'- gCUCGGCgGGCGCGUAGGAUCUUACGCg -3'
miRNA:   3'- -GAGCCGgCCGCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 160802 0.95 0.049407
Target:  5'- gCUCGGCgGGCGCGUAGGAUUUUACGCg -3'
miRNA:   3'- -GAGCCGgCCGCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 130779 0.95 0.049407
Target:  5'- gCUCGGCgGGCGCGUAGGAUUUUACGCg -3'
miRNA:   3'- -GAGCCGgCCGCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 2686 0.95 0.049407
Target:  5'- gCUCGGCCGaCGCGUAAAAUCUUACGCg -3'
miRNA:   3'- -GAGCCGGCcGCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 150961 0.92 0.068449
Target:  5'- gCUCGG-CGGaCGCGUAAAAUCCUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 151070 0.92 0.074219
Target:  5'- gCUCGG-CGGaCGCGUAGGAUCCUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 127516 0.91 0.082642
Target:  5'- gCUCGGCgGGCGCGUAGGAUUUUACGUg -3'
miRNA:   3'- -GAGCCGgCCGCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 72368 0.9 0.099617
Target:  5'- gCUCGGCCGaCGCGUAAGAUUUUACGCg -3'
miRNA:   3'- -GAGCCGGCcGCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 130956 0.88 0.136569
Target:  5'- gCUCGG-CGGaCGCGUAAGAUCUUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 129230 0.88 0.136569
Target:  5'- gCUCGG-CGGaCGCGUAAGAUCUUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 71943 0.88 0.136569
Target:  5'- gCUCGG-CGGaCGCGUAAGAUCUUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 72473 0.87 0.140162
Target:  5'- gCUCGG-CGGaCGCGUAAAAUCUUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 129151 0.87 0.151465
Target:  5'- gCUCGG-CGGaCGCGUAGGAUCUUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 151355 0.87 0.151465
Target:  5'- gCUCGG-CGGaCGCGUAGGAUCUUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 72125 0.87 0.151465
Target:  5'- gCUCGG-CGGaCGCGUAGGAUCUUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 40913 0.87 0.151465
Target:  5'- aCUCGaugacccuaGCCGGCaCGUAAGAUCCUACGCg -3'
miRNA:   3'- -GAGC---------CGGCCGcGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 12429 0.85 0.195327
Target:  5'- gCUCGGCUGaCGCGUAGGAUUUUACGCg -3'
miRNA:   3'- -GAGCCGGCcGCGCAUUUUAGGAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.