miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7817 3' -53.4 NC_001973.1 + 773 0.67 0.9626
Target:  5'- -gCGGCCGuaguugccuCGCGUGAAAUCCgccgaacgGCGg -3'
miRNA:   3'- gaGCCGGCc--------GCGCAUUUUAGGa-------UGCg -5'
7817 3' -53.4 NC_001973.1 + 2099 0.67 0.965609
Target:  5'- aUC-GCCGGCGCGUAcuugcccgugcacAGcaCCUGCGg -3'
miRNA:   3'- gAGcCGGCCGCGCAU-------------UUuaGGAUGCg -5'
7817 3' -53.4 NC_001973.1 + 2513 0.69 0.898068
Target:  5'- -aCGuGCaCGGCGUucau-GUCCUGCGCg -3'
miRNA:   3'- gaGC-CG-GCCGCGcauuuUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 2686 0.95 0.049407
Target:  5'- gCUCGGCCGaCGCGUAAAAUCUUACGCg -3'
miRNA:   3'- -GAGCCGGCcGCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 2804 0.82 0.295175
Target:  5'- gCUCGG-CGGaCGCGUAGGAUUUUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 4345 0.68 0.93783
Target:  5'- uCUCGG-CGGC-CGUGAucguauAUCC-ACGCg -3'
miRNA:   3'- -GAGCCgGCCGcGCAUUu-----UAGGaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 4854 0.7 0.877478
Target:  5'- gUCGGCgGGCGCGacguuUCCgcCGUg -3'
miRNA:   3'- gAGCCGgCCGCGCauuuuAGGauGCG- -5'
7817 3' -53.4 NC_001973.1 + 5955 0.69 0.91063
Target:  5'- -gCGGCCGGCGgaUGcGAcGUCCUGCa- -3'
miRNA:   3'- gaGCCGGCCGC--GCaUUuUAGGAUGcg -5'
7817 3' -53.4 NC_001973.1 + 7076 0.71 0.80442
Target:  5'- -cUGGUCGaGCGCGaguuGAGUCCgGCGCg -3'
miRNA:   3'- gaGCCGGC-CGCGCau--UUUAGGaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 7940 0.71 0.825392
Target:  5'- -gCGGCCGGCGUGgugcacgcgCCcgcgUGCGCg -3'
miRNA:   3'- gaGCCGGCCGCGCauuuua---GG----AUGCG- -5'
7817 3' -53.4 NC_001973.1 + 9445 0.66 0.970238
Target:  5'- -gCGGCCGGCGCcucccAAAUCaaauaauugguggcgUUGCGCc -3'
miRNA:   3'- gaGCCGGCCGCGcau--UUUAG---------------GAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 9643 0.67 0.9626
Target:  5'- uUCGGCUcgagGGCGCGguacagCCgguCGCa -3'
miRNA:   3'- gAGCCGG----CCGCGCauuuuaGGau-GCG- -5'
7817 3' -53.4 NC_001973.1 + 9683 0.67 0.965932
Target:  5'- cCUCGGCgaacggCGGCGCGUAcg--CC-ACGg -3'
miRNA:   3'- -GAGCCG------GCCGCGCAUuuuaGGaUGCg -5'
7817 3' -53.4 NC_001973.1 + 12116 0.82 0.295175
Target:  5'- gCUCGG-CGGaCGCGUAGGAUUUUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 12194 0.78 0.448712
Target:  5'- gCUCGG-CGGaCGCGUAGGAUUUUACGUg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 12272 0.78 0.448712
Target:  5'- gCUCGG-CGGaCGCGUAGGAUUUUACGUg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 12351 0.82 0.295175
Target:  5'- gCUCGG-CGGaCGCGUAGGAUUUUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 12429 0.85 0.195327
Target:  5'- gCUCGGCUGaCGCGUAGGAUUUUACGCg -3'
miRNA:   3'- -GAGCCGGCcGCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 16312 0.66 0.969049
Target:  5'- aUCGGaCCGGaCGCGUGcgcgcucGAUCCgaugacaucACGCc -3'
miRNA:   3'- gAGCC-GGCC-GCGCAUu------UUAGGa--------UGCG- -5'
7817 3' -53.4 NC_001973.1 + 16364 0.82 0.295175
Target:  5'- gCUCGG-CGGaCGCGUAGGAUUUUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.