miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7818 3' -56.9 NC_001973.1 + 71783 0.68 0.811898
Target:  5'- cUCGaggcCGGCGGCGcccccGUCGCCGcUCGAGc -3'
miRNA:   3'- -AGCa---GCCGUUGCu----CGGCGGCaAGCUC- -5'
7818 3' -56.9 NC_001973.1 + 145974 0.68 0.811898
Target:  5'- -gGUCGGgAGCGGGCUcgaagcaucgaGCCGgcUCGGGg -3'
miRNA:   3'- agCAGCCgUUGCUCGG-----------CGGCa-AGCUC- -5'
7818 3' -56.9 NC_001973.1 + 17456 0.68 0.80326
Target:  5'- aCGgCGGCAugcacuCGAGCaUGCCGUgcgccgCGAGg -3'
miRNA:   3'- aGCaGCCGUu-----GCUCG-GCGGCAa-----GCUC- -5'
7818 3' -56.9 NC_001973.1 + 95544 0.68 0.802388
Target:  5'- gCGcCGGCGACGAcaagaucGCCGUCGUggacuaCGGGc -3'
miRNA:   3'- aGCaGCCGUUGCU-------CGGCGGCAa-----GCUC- -5'
7818 3' -56.9 NC_001973.1 + 78617 0.68 0.794474
Target:  5'- cCG-CGGaCGACGAgGCCGCgGgcgcUCGAGg -3'
miRNA:   3'- aGCaGCC-GUUGCU-CGGCGgCa---AGCUC- -5'
7818 3' -56.9 NC_001973.1 + 59021 0.68 0.794474
Target:  5'- aCGUguucuuuucCGGCGACGGcacGCUGaccCCGUUCGAGg -3'
miRNA:   3'- aGCA---------GCCGUUGCU---CGGC---GGCAAGCUC- -5'
7818 3' -56.9 NC_001973.1 + 7094 0.69 0.785548
Target:  5'- -aGUcCGGCGcgcGCGAccGCCGUCGUgcUCGAGu -3'
miRNA:   3'- agCA-GCCGU---UGCU--CGGCGGCA--AGCUC- -5'
7818 3' -56.9 NC_001973.1 + 5846 0.69 0.776489
Target:  5'- gUCGuUCGGCGagcgcACGcGCCGgCGUcUCGAGa -3'
miRNA:   3'- -AGC-AGCCGU-----UGCuCGGCgGCA-AGCUC- -5'
7818 3' -56.9 NC_001973.1 + 63642 0.69 0.776489
Target:  5'- gCGUgGgGCGGCGcgccGGCCGCCuGuUUCGAGg -3'
miRNA:   3'- aGCAgC-CGUUGC----UCGGCGG-C-AAGCUC- -5'
7818 3' -56.9 NC_001973.1 + 145687 0.69 0.770993
Target:  5'- cUCGUCGGCGA-GAGUgccuauuuuuguuugUGCCGaUCGGGc -3'
miRNA:   3'- -AGCAGCCGUUgCUCG---------------GCGGCaAGCUC- -5'
7818 3' -56.9 NC_001973.1 + 119116 0.69 0.767306
Target:  5'- cUCGUCGGCcGCGcuGGUCaucggGCUGUUCGAc -3'
miRNA:   3'- -AGCAGCCGuUGC--UCGG-----CGGCAAGCUc -5'
7818 3' -56.9 NC_001973.1 + 100032 0.69 0.767306
Target:  5'- gUCGUaauaGGCAGCGccaaCGCCGUUUGAa -3'
miRNA:   3'- -AGCAg---CCGUUGCucg-GCGGCAAGCUc -5'
7818 3' -56.9 NC_001973.1 + 8170 0.69 0.758008
Target:  5'- cCGUCGGCGggucgacggACGAGCgCGCCGa-CGGc -3'
miRNA:   3'- aGCAGCCGU---------UGCUCG-GCGGCaaGCUc -5'
7818 3' -56.9 NC_001973.1 + 139055 0.69 0.758008
Target:  5'- -aGUCGGCGA--AG-UGCCGUUCGAGc -3'
miRNA:   3'- agCAGCCGUUgcUCgGCGGCAAGCUC- -5'
7818 3' -56.9 NC_001973.1 + 7050 0.69 0.748603
Target:  5'- -aGUCGGUcgugAACGAGCUGCgCGcccuggUCGAGc -3'
miRNA:   3'- agCAGCCG----UUGCUCGGCG-GCa-----AGCUC- -5'
7818 3' -56.9 NC_001973.1 + 24104 0.69 0.748603
Target:  5'- gUCGaCGGCGACGugucGCUgaGCCGggCGAGc -3'
miRNA:   3'- -AGCaGCCGUUGCu---CGG--CGGCaaGCUC- -5'
7818 3' -56.9 NC_001973.1 + 95833 0.69 0.7391
Target:  5'- aCGggcgCGGCGACGGGCCcgguGCCGggcacgUGGGa -3'
miRNA:   3'- aGCa---GCCGUUGCUCGG----CGGCaa----GCUC- -5'
7818 3' -56.9 NC_001973.1 + 41135 0.69 0.7391
Target:  5'- gUUGUCGGCGGCG-GCgGCgGUcagCGGGc -3'
miRNA:   3'- -AGCAGCCGUUGCuCGgCGgCAa--GCUC- -5'
7818 3' -56.9 NC_001973.1 + 28632 0.69 0.7391
Target:  5'- gUCGUUGcGCAGCGAGUCcugcaGCUGcgCGAGc -3'
miRNA:   3'- -AGCAGC-CGUUGCUCGG-----CGGCaaGCUC- -5'
7818 3' -56.9 NC_001973.1 + 59903 0.7 0.71009
Target:  5'- gUGUCGGCcaacGCGAGCCaGCCGcgCGc- -3'
miRNA:   3'- aGCAGCCGu---UGCUCGG-CGGCaaGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.