miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7818 3' -56.9 NC_001973.1 + 28709 0.76 0.387626
Target:  5'- -gGUCGGCGAUGAGCCGCgacagcuucuCG-UCGAGc -3'
miRNA:   3'- agCAGCCGUUGCUCGGCG----------GCaAGCUC- -5'
7818 3' -56.9 NC_001973.1 + 30344 0.73 0.541247
Target:  5'- aUCGUCGcGCAGgccgaguuCGGGCCGCCGgcgCGGc -3'
miRNA:   3'- -AGCAGC-CGUU--------GCUCGGCGGCaa-GCUc -5'
7818 3' -56.9 NC_001973.1 + 35562 0.68 0.820379
Target:  5'- -aGcCGGCGaaGCGAGCCG-CGUUCGc- -3'
miRNA:   3'- agCaGCCGU--UGCUCGGCgGCAAGCuc -5'
7818 3' -56.9 NC_001973.1 + 39711 0.68 0.828697
Target:  5'- gCGUCGaGCAGCGcGGCCGCCa------ -3'
miRNA:   3'- aGCAGC-CGUUGC-UCGGCGGcaagcuc -5'
7818 3' -56.9 NC_001973.1 + 41135 0.69 0.7391
Target:  5'- gUUGUCGGCGGCG-GCgGCgGUcagCGGGc -3'
miRNA:   3'- -AGCAGCCGUUGCuCGgCGgCAa--GCUC- -5'
7818 3' -56.9 NC_001973.1 + 43749 0.66 0.88852
Target:  5'- gCGUCGGUGACGAucucccugacGCgCGCCGcgcUCGGu -3'
miRNA:   3'- aGCAGCCGUUGCU----------CG-GCGGCa--AGCUc -5'
7818 3' -56.9 NC_001973.1 + 45364 0.66 0.907516
Target:  5'- cUCGUCGuGCAgu-AGCCGCCuugcUCGAGc -3'
miRNA:   3'- -AGCAGC-CGUugcUCGGCGGca--AGCUC- -5'
7818 3' -56.9 NC_001973.1 + 53373 0.66 0.907516
Target:  5'- gUCGaCGGCGACGAcgcccGCCGCCuccUCGc- -3'
miRNA:   3'- -AGCaGCCGUUGCU-----CGGCGGca-AGCuc -5'
7818 3' -56.9 NC_001973.1 + 53562 0.67 0.859433
Target:  5'- gUCGUCGGCcaugucuGCGAcugaggcGCgCGCCGgcgcCGAGg -3'
miRNA:   3'- -AGCAGCCGu------UGCU-------CG-GCGGCaa--GCUC- -5'
7818 3' -56.9 NC_001973.1 + 53857 0.71 0.660583
Target:  5'- cCGgCGGCGGCGGcGCCGCCGagCGcGg -3'
miRNA:   3'- aGCaGCCGUUGCU-CGGCGGCaaGCuC- -5'
7818 3' -56.9 NC_001973.1 + 55425 0.66 0.88175
Target:  5'- uUCGUCGGCGgcgGCGGGCCcgaCGgcgCGGc -3'
miRNA:   3'- -AGCAGCCGU---UGCUCGGcg-GCaa-GCUc -5'
7818 3' -56.9 NC_001973.1 + 55530 0.66 0.901406
Target:  5'- cUCGUCGaGCAGCGucgCGCCGUacaGGGa -3'
miRNA:   3'- -AGCAGC-CGUUGCucgGCGGCAag-CUC- -5'
7818 3' -56.9 NC_001973.1 + 56643 0.68 0.828697
Target:  5'- uUCGgcgCGGCcaaaGGCGGGCCGuCCGUgUUGAc -3'
miRNA:   3'- -AGCa--GCCG----UUGCUCGGC-GGCA-AGCUc -5'
7818 3' -56.9 NC_001973.1 + 59021 0.68 0.794474
Target:  5'- aCGUguucuuuucCGGCGACGGcacGCUGaccCCGUUCGAGg -3'
miRNA:   3'- aGCA---------GCCGUUGCU---CGGC---GGCAAGCUC- -5'
7818 3' -56.9 NC_001973.1 + 59903 0.7 0.71009
Target:  5'- gUGUCGGCcaacGCGAGCCaGCCGcgCGc- -3'
miRNA:   3'- aGCAGCCGu---UGCUCGG-CGGCaaGCuc -5'
7818 3' -56.9 NC_001973.1 + 63642 0.69 0.776489
Target:  5'- gCGUgGgGCGGCGcgccGGCCGCCuGuUUCGAGg -3'
miRNA:   3'- aGCAgC-CGUUGC----UCGGCGG-C-AAGCUC- -5'
7818 3' -56.9 NC_001973.1 + 69551 0.67 0.860183
Target:  5'- -aGUCGagcGCGACGuAGCCGUCGcUCGGc -3'
miRNA:   3'- agCAGC---CGUUGC-UCGGCGGCaAGCUc -5'
7818 3' -56.9 NC_001973.1 + 71783 0.68 0.811898
Target:  5'- cUCGaggcCGGCGGCGcccccGUCGCCGcUCGAGc -3'
miRNA:   3'- -AGCa---GCCGUUGCu----CGGCGGCaAGCUC- -5'
7818 3' -56.9 NC_001973.1 + 78617 0.68 0.794474
Target:  5'- cCG-CGGaCGACGAgGCCGCgGgcgcUCGAGg -3'
miRNA:   3'- aGCaGCC-GUUGCU-CGGCGgCa---AGCUC- -5'
7818 3' -56.9 NC_001973.1 + 79289 0.66 0.901406
Target:  5'- --aUCGGCGACGAgGCCGUCGauuauuugUCaGAGu -3'
miRNA:   3'- agcAGCCGUUGCU-CGGCGGCa-------AG-CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.