miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7818 3' -56.9 NC_001973.1 + 4645 0.79 0.259437
Target:  5'- cUGUCGGCGGCGGG-CGCCGUcggCGAGu -3'
miRNA:   3'- aGCAGCCGUUGCUCgGCGGCAa--GCUC- -5'
7818 3' -56.9 NC_001973.1 + 4964 0.66 0.913401
Target:  5'- ---aCGGCAcgGCGAGCCGgUCGUgCGAc -3'
miRNA:   3'- agcaGCCGU--UGCUCGGC-GGCAaGCUc -5'
7818 3' -56.9 NC_001973.1 + 5846 0.69 0.776489
Target:  5'- gUCGuUCGGCGagcgcACGcGCCGgCGUcUCGAGa -3'
miRNA:   3'- -AGC-AGCCGU-----UGCuCGGCgGCA-AGCUC- -5'
7818 3' -56.9 NC_001973.1 + 6417 0.66 0.895073
Target:  5'- gCG-CGGCGGCG-GCgCGCCGa-CGAGc -3'
miRNA:   3'- aGCaGCCGUUGCuCG-GCGGCaaGCUC- -5'
7818 3' -56.9 NC_001973.1 + 7050 0.69 0.748603
Target:  5'- -aGUCGGUcgugAACGAGCUGCgCGcccuggUCGAGc -3'
miRNA:   3'- agCAGCCG----UUGCUCGGCG-GCa-----AGCUC- -5'
7818 3' -56.9 NC_001973.1 + 7094 0.69 0.785548
Target:  5'- -aGUcCGGCGcgcGCGAccGCCGUCGUgcUCGAGu -3'
miRNA:   3'- agCA-GCCGU---UGCU--CGGCGGCA--AGCUC- -5'
7818 3' -56.9 NC_001973.1 + 8170 0.69 0.758008
Target:  5'- cCGUCGGCGggucgacggACGAGCgCGCCGa-CGGc -3'
miRNA:   3'- aGCAGCCGU---------UGCUCG-GCGGCaaGCUc -5'
7818 3' -56.9 NC_001973.1 + 8422 0.68 0.828697
Target:  5'- ---aCGGCAA-GAGCCGCCGcgUCGu- -3'
miRNA:   3'- agcaGCCGUUgCUCGGCGGCa-AGCuc -5'
7818 3' -56.9 NC_001973.1 + 9127 0.66 0.881061
Target:  5'- cUCGcacaCGGCGAUGAucgacgaggcgucGCCGUCGUUCGu- -3'
miRNA:   3'- -AGCa---GCCGUUGCU-------------CGGCGGCAAGCuc -5'
7818 3' -56.9 NC_001973.1 + 10342 0.71 0.630549
Target:  5'- -gGUCGGCGAU--GCgGCCGUUCGGc -3'
miRNA:   3'- agCAGCCGUUGcuCGgCGGCAAGCUc -5'
7818 3' -56.9 NC_001973.1 + 10809 0.66 0.913401
Target:  5'- cCGaCGGCGGCGAGaauCGCCa--CGAGg -3'
miRNA:   3'- aGCaGCCGUUGCUCg--GCGGcaaGCUC- -5'
7818 3' -56.9 NC_001973.1 + 14233 0.76 0.404213
Target:  5'- -aGUCGGCGAUGAGCCacacGCCGcgcgUCGAc -3'
miRNA:   3'- agCAGCCGUUGCUCGG----CGGCa---AGCUc -5'
7818 3' -56.9 NC_001973.1 + 17456 0.68 0.80326
Target:  5'- aCGgCGGCAugcacuCGAGCaUGCCGUgcgccgCGAGg -3'
miRNA:   3'- aGCaGCCGUu-----GCUCG-GCGGCAa-----GCUC- -5'
7818 3' -56.9 NC_001973.1 + 17820 0.66 0.88175
Target:  5'- cUCGUUGaGCGACGcGCCGUCGa--GGGu -3'
miRNA:   3'- -AGCAGC-CGUUGCuCGGCGGCaagCUC- -5'
7818 3' -56.9 NC_001973.1 + 18615 1.08 0.003259
Target:  5'- aUCGUCGGCAACGAGCCGCCGUUCGAGc -3'
miRNA:   3'- -AGCAGCCGUUGCUCGGCGGCAAGCUC- -5'
7818 3' -56.9 NC_001973.1 + 20153 0.66 0.895073
Target:  5'- aUGUCGGCcauucgguuGGCGAGCUggGCCGUUUc-- -3'
miRNA:   3'- aGCAGCCG---------UUGCUCGG--CGGCAAGcuc -5'
7818 3' -56.9 NC_001973.1 + 21541 0.67 0.858681
Target:  5'- aUC-UCGGCGuCGGGCgCGCCGUggucccggcgcgCGGGg -3'
miRNA:   3'- -AGcAGCCGUuGCUCG-GCGGCAa-----------GCUC- -5'
7818 3' -56.9 NC_001973.1 + 23485 0.66 0.901406
Target:  5'- -aGUCGGCccaAACGAacGCCGCCcUcaaccagaugaUCGAGg -3'
miRNA:   3'- agCAGCCG---UUGCU--CGGCGGcA-----------AGCUC- -5'
7818 3' -56.9 NC_001973.1 + 24104 0.69 0.748603
Target:  5'- gUCGaCGGCGACGugucGCUgaGCCGggCGAGc -3'
miRNA:   3'- -AGCaGCCGUUGCu---CGG--CGGCaaGCUC- -5'
7818 3' -56.9 NC_001973.1 + 28632 0.69 0.7391
Target:  5'- gUCGUUGcGCAGCGAGUCcugcaGCUGcgCGAGc -3'
miRNA:   3'- -AGCAGC-CGUUGCUCGG-----CGGCaaGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.