miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7818 3' -56.9 NC_001973.1 + 18615 1.08 0.003259
Target:  5'- aUCGUCGGCAACGAGCCGCCGUUCGAGc -3'
miRNA:   3'- -AGCAGCCGUUGCUCGGCGGCAAGCUC- -5'
7818 3' -56.9 NC_001973.1 + 4645 0.79 0.259437
Target:  5'- cUGUCGGCGGCGGG-CGCCGUcggCGAGu -3'
miRNA:   3'- aGCAGCCGUUGCUCgGCGGCAa--GCUC- -5'
7818 3' -56.9 NC_001973.1 + 150286 0.78 0.29119
Target:  5'- cUUGUCGGCc-CGGGCCGCCGcUUCGGu -3'
miRNA:   3'- -AGCAGCCGuuGCUCGGCGGC-AAGCUc -5'
7818 3' -56.9 NC_001973.1 + 28709 0.76 0.387626
Target:  5'- -gGUCGGCGAUGAGCCGCgacagcuucuCG-UCGAGc -3'
miRNA:   3'- agCAGCCGUUGCUCGGCG----------GCaAGCUC- -5'
7818 3' -56.9 NC_001973.1 + 134973 0.76 0.404213
Target:  5'- -gGUCGGCGAucgaguacgucCGGGCCGUCGggCGGGa -3'
miRNA:   3'- agCAGCCGUU-----------GCUCGGCGGCaaGCUC- -5'
7818 3' -56.9 NC_001973.1 + 14233 0.76 0.404213
Target:  5'- -aGUCGGCGAUGAGCCacacGCCGcgcgUCGAc -3'
miRNA:   3'- agCAGCCGUUGCUCGG----CGGCa---AGCUc -5'
7818 3' -56.9 NC_001973.1 + 122615 0.75 0.45565
Target:  5'- gCGUCGGCGGCGccgacgcGGgCGCCGgcgucggUCGAGa -3'
miRNA:   3'- aGCAGCCGUUGC-------UCgGCGGCa------AGCUC- -5'
7818 3' -56.9 NC_001973.1 + 88147 0.74 0.474795
Target:  5'- cUCGUCGGCGGcCGAcGCCGCCGagCa-- -3'
miRNA:   3'- -AGCAGCCGUU-GCU-CGGCGGCaaGcuc -5'
7818 3' -56.9 NC_001973.1 + 30344 0.73 0.541247
Target:  5'- aUCGUCGcGCAGgccgaguuCGGGCCGCCGgcgCGGc -3'
miRNA:   3'- -AGCAGC-CGUU--------GCUCGGCGGCaa-GCUc -5'
7818 3' -56.9 NC_001973.1 + 104260 0.72 0.610519
Target:  5'- cUGuUCGGCGGCGGcGCCGCCGc-CGGGc -3'
miRNA:   3'- aGC-AGCCGUUGCU-CGGCGGCaaGCUC- -5'
7818 3' -56.9 NC_001973.1 + 10342 0.71 0.630549
Target:  5'- -gGUCGGCGAU--GCgGCCGUUCGGc -3'
miRNA:   3'- agCAGCCGUUGcuCGgCGGCAAGCUc -5'
7818 3' -56.9 NC_001973.1 + 93751 0.71 0.649582
Target:  5'- cCGccCGGCGaccaggaGCGGGCCGCCGccgUCGAu -3'
miRNA:   3'- aGCa-GCCGU-------UGCUCGGCGGCa--AGCUc -5'
7818 3' -56.9 NC_001973.1 + 53857 0.71 0.660583
Target:  5'- cCGgCGGCGGCGGcGCCGCCGagCGcGg -3'
miRNA:   3'- aGCaGCCGUUGCU-CGGCGGCaaGCuC- -5'
7818 3' -56.9 NC_001973.1 + 59903 0.7 0.71009
Target:  5'- gUGUCGGCcaacGCGAGCCaGCCGcgCGc- -3'
miRNA:   3'- aGCAGCCGu---UGCUCGG-CGGCaaGCuc -5'
7818 3' -56.9 NC_001973.1 + 103284 0.7 0.71009
Target:  5'- cCG-CGGCGAguGGCUGCCGUUCGcGGa -3'
miRNA:   3'- aGCaGCCGUUgcUCGGCGGCAAGC-UC- -5'
7818 3' -56.9 NC_001973.1 + 28632 0.69 0.7391
Target:  5'- gUCGUUGcGCAGCGAGUCcugcaGCUGcgCGAGc -3'
miRNA:   3'- -AGCAGC-CGUUGCUCGG-----CGGCaaGCUC- -5'
7818 3' -56.9 NC_001973.1 + 41135 0.69 0.7391
Target:  5'- gUUGUCGGCGGCG-GCgGCgGUcagCGGGc -3'
miRNA:   3'- -AGCAGCCGUUGCuCGgCGgCAa--GCUC- -5'
7818 3' -56.9 NC_001973.1 + 95833 0.69 0.7391
Target:  5'- aCGggcgCGGCGACGGGCCcgguGCCGggcacgUGGGa -3'
miRNA:   3'- aGCa---GCCGUUGCUCGG----CGGCaa----GCUC- -5'
7818 3' -56.9 NC_001973.1 + 24104 0.69 0.748603
Target:  5'- gUCGaCGGCGACGugucGCUgaGCCGggCGAGc -3'
miRNA:   3'- -AGCaGCCGUUGCu---CGG--CGGCaaGCUC- -5'
7818 3' -56.9 NC_001973.1 + 7050 0.69 0.748603
Target:  5'- -aGUCGGUcgugAACGAGCUGCgCGcccuggUCGAGc -3'
miRNA:   3'- agCAGCCG----UUGCUCGGCG-GCa-----AGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.