miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7818 5' -55.6 NC_001973.1 + 58487 0.67 0.860222
Target:  5'- uGCUCGGCGGGC--CGC-UUGCAGu- -3'
miRNA:   3'- cCGGGCUGCCCGuuGCGcAACGUUua -5'
7818 5' -55.6 NC_001973.1 + 40269 0.67 0.860222
Target:  5'- aGCCgCGACGGGCgcucuucagGugGCGUUGaAAGg -3'
miRNA:   3'- cCGG-GCUGCCCG---------UugCGCAACgUUUa -5'
7818 5' -55.6 NC_001973.1 + 43591 0.67 0.860222
Target:  5'- aGUCCaGCGGGUugGGCGUGUUGUAGu- -3'
miRNA:   3'- cCGGGcUGCCCG--UUGCGCAACGUUua -5'
7818 5' -55.6 NC_001973.1 + 146023 0.68 0.85244
Target:  5'- cGGCUCGagcGCGGGuCGACGgaCGggGCGAGUc -3'
miRNA:   3'- -CCGGGC---UGCCC-GUUGC--GCaaCGUUUA- -5'
7818 5' -55.6 NC_001973.1 + 5926 0.68 0.847673
Target:  5'- cGCCCG-CGGucgcgcgcacgaugcGCGACGCGgccgGCGGAUg -3'
miRNA:   3'- cCGGGCuGCC---------------CGUUGCGCaa--CGUUUA- -5'
7818 5' -55.6 NC_001973.1 + 7451 0.68 0.842023
Target:  5'- aGCUCGGCGGuGCGGCGCGacgaggacuuuugccGCAGAg -3'
miRNA:   3'- cCGGGCUGCC-CGUUGCGCaa-------------CGUUUa -5'
7818 5' -55.6 NC_001973.1 + 29701 0.68 0.827915
Target:  5'- cGCCCGACugaGGaGCGuccGCGCGgacaUGCAAAa -3'
miRNA:   3'- cCGGGCUG---CC-CGU---UGCGCa---ACGUUUa -5'
7818 5' -55.6 NC_001973.1 + 6493 0.68 0.827915
Target:  5'- gGGCgugcuguaCCGGCuGGGCGGCGCGggcgUGCcGAc -3'
miRNA:   3'- -CCG--------GGCUG-CCCGUUGCGCa---ACGuUUa -5'
7818 5' -55.6 NC_001973.1 + 141412 0.68 0.816774
Target:  5'- cGGCCCGACaucgugcagcugaaGGGCAccuugaACGCGUUcuacgugccgcGCGAc- -3'
miRNA:   3'- -CCGGGCUG--------------CCCGU------UGCGCAA-----------CGUUua -5'
7818 5' -55.6 NC_001973.1 + 29000 0.69 0.810656
Target:  5'- gGGCgCCGGCggcuGGGCAcagcACGCGUcGCGGu- -3'
miRNA:   3'- -CCG-GGCUG----CCCGU----UGCGCAaCGUUua -5'
7818 5' -55.6 NC_001973.1 + 95690 0.69 0.808009
Target:  5'- cGGCCCGACGaGCccuacaccgccgacGGCGCGgUGCGc-- -3'
miRNA:   3'- -CCGGGCUGCcCG--------------UUGCGCaACGUuua -5'
7818 5' -55.6 NC_001973.1 + 31055 0.69 0.801778
Target:  5'- cGCCgaCGGCGGGCAGCGU---GCGGAUc -3'
miRNA:   3'- cCGG--GCUGCCCGUUGCGcaaCGUUUA- -5'
7818 5' -55.6 NC_001973.1 + 21064 0.69 0.792745
Target:  5'- aGCUCGGCGGGCGcguaggaucuuACGCGUcgGCc--- -3'
miRNA:   3'- cCGGGCUGCCCGU-----------UGCGCAa-CGuuua -5'
7818 5' -55.6 NC_001973.1 + 130778 0.69 0.792745
Target:  5'- aGCUCGGCGGGCGcguaggauuuuACGCGUcgGCc--- -3'
miRNA:   3'- cCGGGCUGCCCGU-----------UGCGCAa-CGuuua -5'
7818 5' -55.6 NC_001973.1 + 160801 0.69 0.792745
Target:  5'- aGCUCGGCGGGCGcguaggauuuuACGCGUcgGCc--- -3'
miRNA:   3'- cCGGGCUGCCCGU-----------UGCGCAa-CGuuua -5'
7818 5' -55.6 NC_001973.1 + 89058 0.69 0.792745
Target:  5'- -uCUCGACGGGCAGC-CGguccaugUGCAGAg -3'
miRNA:   3'- ccGGGCUGCCCGUUGcGCa------ACGUUUa -5'
7818 5' -55.6 NC_001973.1 + 90314 0.69 0.792745
Target:  5'- cGG-UCGGCGGGCGAgGCGgUGCGc-- -3'
miRNA:   3'- -CCgGGCUGCCCGUUgCGCaACGUuua -5'
7818 5' -55.6 NC_001973.1 + 137203 0.69 0.774251
Target:  5'- cGGCgCGagucGCGcGGCGGCGCGUccGCAGAc -3'
miRNA:   3'- -CCGgGC----UGC-CCGUUGCGCAa-CGUUUa -5'
7818 5' -55.6 NC_001973.1 + 127515 0.69 0.774251
Target:  5'- aGCUCGGCGGGCGcguaggauuuuACGUGccgGCAAGg -3'
miRNA:   3'- cCGGGCUGCCCGU-----------UGCGCaa-CGUUUa -5'
7818 5' -55.6 NC_001973.1 + 146387 0.69 0.771431
Target:  5'- uGCCCGGCGGGCAggucgcugauguccACGUacugcgGCGAGUc -3'
miRNA:   3'- cCGGGCUGCCCGU--------------UGCGcaa---CGUUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.