miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7818 5' -55.6 NC_001973.1 + 18650 1.09 0.003284
Target:  5'- cGGCCCGACGGGCAACGCGUUGCAAAUa -3'
miRNA:   3'- -CCGGGCUGCCCGUUGCGCAACGUUUA- -5'
7818 5' -55.6 NC_001973.1 + 113410 0.79 0.287422
Target:  5'- gGGCuuGACGGGCAGCgGCG-UGCAc-- -3'
miRNA:   3'- -CCGggCUGCCCGUUG-CGCaACGUuua -5'
7818 5' -55.6 NC_001973.1 + 63637 0.77 0.377329
Target:  5'- cGGCCgCGugGGGCGGCGCGccgGCc--- -3'
miRNA:   3'- -CCGG-GCugCCCGUUGCGCaa-CGuuua -5'
7818 5' -55.6 NC_001973.1 + 83796 0.75 0.436951
Target:  5'- cGGCCCGGCacucggacgagcuGGGCcGCGCGcgGCGGAg -3'
miRNA:   3'- -CCGGGCUG-------------CCCGuUGCGCaaCGUUUa -5'
7818 5' -55.6 NC_001973.1 + 121230 0.75 0.474841
Target:  5'- cGCCacgCGGCGGcGCGGCGCGUcGCAGAa -3'
miRNA:   3'- cCGG---GCUGCC-CGUUGCGCAaCGUUUa -5'
7818 5' -55.6 NC_001973.1 + 124005 0.75 0.474841
Target:  5'- cGGCCUGAccaguCGGGCGACGCGcgcGCAc-- -3'
miRNA:   3'- -CCGGGCU-----GCCCGUUGCGCaa-CGUuua -5'
7818 5' -55.6 NC_001973.1 + 105469 0.74 0.491028
Target:  5'- cGCgCGGCGGGCAcaugauguggccggGCGCGUUGCc--- -3'
miRNA:   3'- cCGgGCUGCCCGU--------------UGCGCAACGuuua -5'
7818 5' -55.6 NC_001973.1 + 10764 0.74 0.503576
Target:  5'- uGCgCGACGGGCucguCGUGUUGCAc-- -3'
miRNA:   3'- cCGgGCUGCCCGuu--GCGCAACGUuua -5'
7818 5' -55.6 NC_001973.1 + 152385 0.74 0.523146
Target:  5'- cGGCCgGcGCGGGCgGGCGCGggGCGGc- -3'
miRNA:   3'- -CCGGgC-UGCCCG-UUGCGCaaCGUUua -5'
7818 5' -55.6 NC_001973.1 + 28961 0.73 0.573223
Target:  5'- gGGCCgGcaguCGGGCGgcgACGCGUUGUAGu- -3'
miRNA:   3'- -CCGGgCu---GCCCGU---UGCGCAACGUUua -5'
7818 5' -55.6 NC_001973.1 + 54608 0.72 0.603821
Target:  5'- uGCCCGAUGauCAugGUGUUGCAGAa -3'
miRNA:   3'- cCGGGCUGCccGUugCGCAACGUUUa -5'
7818 5' -55.6 NC_001973.1 + 122668 0.71 0.655136
Target:  5'- cGGCgCCGuCGGGCcagAACGCGcgGCGAu- -3'
miRNA:   3'- -CCG-GGCuGCCCG---UUGCGCaaCGUUua -5'
7818 5' -55.6 NC_001973.1 + 77304 0.71 0.665376
Target:  5'- cGCCgaGACGGGCGGCGCGgcucCGAAa -3'
miRNA:   3'- cCGGg-CUGCCCGUUGCGCaac-GUUUa -5'
7818 5' -55.6 NC_001973.1 + 55440 0.71 0.705979
Target:  5'- gGGCCCGACGGcGCGGCGgauCGUcuCGAAc -3'
miRNA:   3'- -CCGGGCUGCC-CGUUGC---GCAacGUUUa -5'
7818 5' -55.6 NC_001973.1 + 62577 0.7 0.715995
Target:  5'- gGGCUCGAgCGGGCGcagcgACGCGUcGCu--- -3'
miRNA:   3'- -CCGGGCU-GCCCGU-----UGCGCAaCGuuua -5'
7818 5' -55.6 NC_001973.1 + 39820 0.7 0.735801
Target:  5'- cGGCcuCCGACagGGGCuccGCGCGUcgaucgUGCAGAUg -3'
miRNA:   3'- -CCG--GGCUG--CCCGu--UGCGCA------ACGUUUA- -5'
7818 5' -55.6 NC_001973.1 + 123723 0.7 0.745573
Target:  5'- aGUCUGAUGGGUuuGGCGCGcgGCGAGa -3'
miRNA:   3'- cCGGGCUGCCCG--UUGCGCaaCGUUUa -5'
7818 5' -55.6 NC_001973.1 + 146387 0.69 0.771431
Target:  5'- uGCCCGGCGGGCAggucgcugauguccACGUacugcgGCGAGUc -3'
miRNA:   3'- cCGGGCUGCCCGU--------------UGCGcaa---CGUUUA- -5'
7818 5' -55.6 NC_001973.1 + 137203 0.69 0.774251
Target:  5'- cGGCgCGagucGCGcGGCGGCGCGUccGCAGAc -3'
miRNA:   3'- -CCGgGC----UGC-CCGUUGCGCAa-CGUUUa -5'
7818 5' -55.6 NC_001973.1 + 127515 0.69 0.774251
Target:  5'- aGCUCGGCGGGCGcguaggauuuuACGUGccgGCAAGg -3'
miRNA:   3'- cCGGGCUGCCCGU-----------UGCGCaa-CGUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.