miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7818 5' -55.6 NC_001973.1 + 5880 0.66 0.931101
Target:  5'- aGGCUgGuGCGGcGCAGCGCGc-GCGAc- -3'
miRNA:   3'- -CCGGgC-UGCC-CGUUGCGCaaCGUUua -5'
7818 5' -55.6 NC_001973.1 + 5926 0.68 0.847673
Target:  5'- cGCCCG-CGGucgcgcgcacgaugcGCGACGCGgccgGCGGAUg -3'
miRNA:   3'- cCGGGCuGCC---------------CGUUGCGCaa--CGUUUA- -5'
7818 5' -55.6 NC_001973.1 + 6493 0.68 0.827915
Target:  5'- gGGCgugcuguaCCGGCuGGGCGGCGCGggcgUGCcGAc -3'
miRNA:   3'- -CCG--------GGCUG-CCCGUUGCGCa---ACGuUUa -5'
7818 5' -55.6 NC_001973.1 + 6973 0.66 0.920327
Target:  5'- cGCCCGAacaGGGCcGC-CGcgGCAAAa -3'
miRNA:   3'- cCGGGCUg--CCCGuUGcGCaaCGUUUa -5'
7818 5' -55.6 NC_001973.1 + 7268 0.66 0.902369
Target:  5'- gGGCUCGGCGcGCGGCGCGcccGCu--- -3'
miRNA:   3'- -CCGGGCUGCcCGUUGCGCaa-CGuuua -5'
7818 5' -55.6 NC_001973.1 + 7451 0.68 0.842023
Target:  5'- aGCUCGGCGGuGCGGCGCGacgaggacuuuugccGCAGAg -3'
miRNA:   3'- cCGGGCUGCC-CGUUGCGCaa-------------CGUUUa -5'
7818 5' -55.6 NC_001973.1 + 9098 0.66 0.931101
Target:  5'- aGCUCGGCGcGCAuccgcgcCGCGUUGCGc-- -3'
miRNA:   3'- cCGGGCUGCcCGUu------GCGCAACGUuua -5'
7818 5' -55.6 NC_001973.1 + 10764 0.74 0.503576
Target:  5'- uGCgCGACGGGCucguCGUGUUGCAc-- -3'
miRNA:   3'- cCGgGCUGCCCGuu--GCGCAACGUuua -5'
7818 5' -55.6 NC_001973.1 + 17270 0.66 0.908593
Target:  5'- cGGCCgCGcacuCGGGCAuCGCGUcGUAc-- -3'
miRNA:   3'- -CCGG-GCu---GCCCGUuGCGCAaCGUuua -5'
7818 5' -55.6 NC_001973.1 + 18650 1.09 0.003284
Target:  5'- cGGCCCGACGGGCAACGCGUUGCAAAUa -3'
miRNA:   3'- -CCGGGCUGCCCGUUGCGCAACGUUUA- -5'
7818 5' -55.6 NC_001973.1 + 21064 0.69 0.792745
Target:  5'- aGCUCGGCGGGCGcguaggaucuuACGCGUcgGCc--- -3'
miRNA:   3'- cCGGGCUGCCCGU-----------UGCGCAa-CGuuua -5'
7818 5' -55.6 NC_001973.1 + 23738 0.67 0.875157
Target:  5'- gGGCCCGAC-GGCGAcCGCGcccgGCc--- -3'
miRNA:   3'- -CCGGGCUGcCCGUU-GCGCaa--CGuuua -5'
7818 5' -55.6 NC_001973.1 + 28961 0.73 0.573223
Target:  5'- gGGCCgGcaguCGGGCGgcgACGCGUUGUAGu- -3'
miRNA:   3'- -CCGGgCu---GCCCGU---UGCGCAACGUUua -5'
7818 5' -55.6 NC_001973.1 + 29000 0.69 0.810656
Target:  5'- gGGCgCCGGCggcuGGGCAcagcACGCGUcGCGGu- -3'
miRNA:   3'- -CCG-GGCUG----CCCGU----UGCGCAaCGUUua -5'
7818 5' -55.6 NC_001973.1 + 29701 0.68 0.827915
Target:  5'- cGCCCGACugaGGaGCGuccGCGCGgacaUGCAAAa -3'
miRNA:   3'- cCGGGCUG---CC-CGU---UGCGCa---ACGUUUa -5'
7818 5' -55.6 NC_001973.1 + 30391 0.67 0.867796
Target:  5'- cGGgCCGGCGcGGCGGCG-GcgGCGGAg -3'
miRNA:   3'- -CCgGGCUGC-CCGUUGCgCaaCGUUUa -5'
7818 5' -55.6 NC_001973.1 + 30806 0.66 0.920327
Target:  5'- cGCCCGAgGGGUugGugGCGUcGUuGAUc -3'
miRNA:   3'- cCGGGCUgCCCG--UugCGCAaCGuUUA- -5'
7818 5' -55.6 NC_001973.1 + 31055 0.69 0.801778
Target:  5'- cGCCgaCGGCGGGCAGCGU---GCGGAUc -3'
miRNA:   3'- cCGG--GCUGCCCGUUGCGcaaCGUUUA- -5'
7818 5' -55.6 NC_001973.1 + 35427 0.66 0.925835
Target:  5'- cGCUCGACGcGCAACGCGcgGUc--- -3'
miRNA:   3'- cCGGGCUGCcCGUUGCGCaaCGuuua -5'
7818 5' -55.6 NC_001973.1 + 35674 0.67 0.867796
Target:  5'- cGGCgcggCCGAC-GGCGGCGCGgugGCGGc- -3'
miRNA:   3'- -CCG----GGCUGcCCGUUGCGCaa-CGUUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.