miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7822 3' -57.2 NC_001973.1 + 12047 0.66 0.874783
Target:  5'- aAAAgUGAugcGCGCgagccgaucgacguuGCCGGACGAcggucCCGAUGa -3'
miRNA:   3'- -UUUgACU---CGCG---------------CGGCCUGCU-----GGCUAC- -5'
7822 3' -57.2 NC_001973.1 + 160460 0.66 0.874783
Target:  5'- uAAACUGAGCuCGgCGGACGcguaggauuuuacguGCCGGc- -3'
miRNA:   3'- -UUUGACUCGcGCgGCCUGC---------------UGGCUac -5'
7822 3' -57.2 NC_001973.1 + 127352 0.66 0.874783
Target:  5'- uAAACUGAGCuCGgCGGACGcguaagauuuuacguGCCGGc- -3'
miRNA:   3'- -UUUGACUCGcGCgGCCUGC---------------UGGCUac -5'
7822 3' -57.2 NC_001973.1 + 12186 0.66 0.874783
Target:  5'- uAAACUGAGCuCGgCGGACGcguaggauuuuacguGCCGGc- -3'
miRNA:   3'- -UUUGACUCGcGCgGCCUGC---------------UGGCUac -5'
7822 3' -57.2 NC_001973.1 + 107336 0.66 0.8697
Target:  5'- aAGGCgGAGCGCGCacguccacgcccccCGGcguCGGCCGAg- -3'
miRNA:   3'- -UUUGaCUCGCGCG--------------GCCu--GCUGGCUac -5'
7822 3' -57.2 NC_001973.1 + 3564 0.66 0.864514
Target:  5'- cGGCgGGGCGCGC--GAUGACCGAc- -3'
miRNA:   3'- uUUGaCUCGCGCGgcCUGCUGGCUac -5'
7822 3' -57.2 NC_001973.1 + 45164 0.66 0.85693
Target:  5'- ----cGGGCGCGCCGaGCaGCCGGUc -3'
miRNA:   3'- uuugaCUCGCGCGGCcUGcUGGCUAc -5'
7822 3' -57.2 NC_001973.1 + 2617 0.66 0.85693
Target:  5'- aAAACUaa--GCGCCGGccGCGGCCGAUc -3'
miRNA:   3'- -UUUGAcucgCGCGGCC--UGCUGGCUAc -5'
7822 3' -57.2 NC_001973.1 + 34198 0.66 0.849146
Target:  5'- --gUUGAGCGCGuuGGACGucuugGCCa--- -3'
miRNA:   3'- uuuGACUCGCGCggCCUGC-----UGGcuac -5'
7822 3' -57.2 NC_001973.1 + 134958 0.66 0.841168
Target:  5'- --uUUGAGCGaaCGCCGGgucgGCGAUCGAg- -3'
miRNA:   3'- uuuGACUCGC--GCGGCC----UGCUGGCUac -5'
7822 3' -57.2 NC_001973.1 + 5730 0.67 0.833002
Target:  5'- -cGCUGGGUgGUGaCCGGACGggccGCCGAa- -3'
miRNA:   3'- uuUGACUCG-CGC-GGCCUGC----UGGCUac -5'
7822 3' -57.2 NC_001973.1 + 46206 0.67 0.833002
Target:  5'- aGAACUGuuucGCGCGC--GACGGCCGGg- -3'
miRNA:   3'- -UUUGACu---CGCGCGgcCUGCUGGCUac -5'
7822 3' -57.2 NC_001973.1 + 55646 0.67 0.833002
Target:  5'- -cGCUcaAGCGCGUCGGAUGggaGCCGAg- -3'
miRNA:   3'- uuUGAc-UCGCGCGGCCUGC---UGGCUac -5'
7822 3' -57.2 NC_001973.1 + 158833 0.67 0.824657
Target:  5'- cGGCcGAGCGCG-CGGACGAgCCGc-- -3'
miRNA:   3'- uUUGaCUCGCGCgGCCUGCU-GGCuac -5'
7822 3' -57.2 NC_001973.1 + 121545 0.67 0.824657
Target:  5'- -cACcGAGCgGCGUCGGcGCGugUGGUGg -3'
miRNA:   3'- uuUGaCUCG-CGCGGCC-UGCugGCUAC- -5'
7822 3' -57.2 NC_001973.1 + 115397 0.67 0.824657
Target:  5'- cGGCUGAGCGCGCaCGauucGCGGCUGc-- -3'
miRNA:   3'- uUUGACUCGCGCG-GCc---UGCUGGCuac -5'
7822 3' -57.2 NC_001973.1 + 63185 0.67 0.824657
Target:  5'- cGGACaGAGCGCGCUcGACGACUc--- -3'
miRNA:   3'- -UUUGaCUCGCGCGGcCUGCUGGcuac -5'
7822 3' -57.2 NC_001973.1 + 109188 0.67 0.816139
Target:  5'- -cGCcGAGCGCGCCGcGCaGCCGGc- -3'
miRNA:   3'- uuUGaCUCGCGCGGCcUGcUGGCUac -5'
7822 3' -57.2 NC_001973.1 + 107876 0.67 0.816139
Target:  5'- uGAAC-GGGuCGCGCCGGccguUGGCCGAc- -3'
miRNA:   3'- -UUUGaCUC-GCGCGGCCu---GCUGGCUac -5'
7822 3' -57.2 NC_001973.1 + 45607 0.67 0.816139
Target:  5'- cGGCgGAGCGCGUCGG-CGAUCa--- -3'
miRNA:   3'- uUUGaCUCGCGCGGCCuGCUGGcuac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.