miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
783 5' -48.6 NC_000852.3 + 139106 0.67 0.999961
Target:  5'- uCACCGGuauguacuuuAAGCAACUCgG--AACGAGUg -3'
miRNA:   3'- -GUGGCC----------UUUGUUGGGgUaaUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 164806 0.7 0.998956
Target:  5'- --gCGGGuuCGACCCCcgUcgcuaucauugcuGGCGAGCa -3'
miRNA:   3'- gugGCCUuuGUUGGGGuaA-------------UUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 164902 0.72 0.995314
Target:  5'- uCACCGGuu-CGAUCCCggUAGCGAa- -3'
miRNA:   3'- -GUGGCCuuuGUUGGGGuaAUUGCUcg -5'
783 5' -48.6 NC_000852.3 + 171523 0.74 0.973682
Target:  5'- -cCCGGAAGCAACuCCCA---ACgGAGCu -3'
miRNA:   3'- guGGCCUUUGUUG-GGGUaauUG-CUCG- -5'
783 5' -48.6 NC_000852.3 + 173318 0.66 0.999984
Target:  5'- cCGuuGGaAAACGACCUCAU--ACGGGa -3'
miRNA:   3'- -GUggCC-UUUGUUGGGGUAauUGCUCg -5'
783 5' -48.6 NC_000852.3 + 193136 0.66 0.999978
Target:  5'- uCGCUGcGAGACAACCCCccgUAuCGAc- -3'
miRNA:   3'- -GUGGC-CUUUGUUGGGGua-AUuGCUcg -5'
783 5' -48.6 NC_000852.3 + 212493 0.66 0.999978
Target:  5'- aCACCGGGggUAGCgCCGgugAAgGuGCc -3'
miRNA:   3'- -GUGGCCUuuGUUGgGGUaa-UUgCuCG- -5'
783 5' -48.6 NC_000852.3 + 217980 0.72 0.995314
Target:  5'- uCACCGGGAGCugaAAUCCCA--GACGAa- -3'
miRNA:   3'- -GUGGCCUUUG---UUGGGGUaaUUGCUcg -5'
783 5' -48.6 NC_000852.3 + 245707 0.69 0.999308
Target:  5'- aCACgGGGAugGACUuuCCAUUGAUGAuGUa -3'
miRNA:   3'- -GUGgCCUUugUUGG--GGUAAUUGCU-CG- -5'
783 5' -48.6 NC_000852.3 + 250998 0.66 0.999987
Target:  5'- cCACCuGGAAucauagaaauucuaGCAGCUCgUAUggcgUAACGAGCg -3'
miRNA:   3'- -GUGG-CCUU--------------UGUUGGG-GUA----AUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 257262 1.14 0.01805
Target:  5'- gCACCGGAAACAACCCCAUUAACGAGCa -3'
miRNA:   3'- -GUGGCCUUUGUUGGGGUAAUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 258670 0.67 0.999945
Target:  5'- aGCgGGAAAUAACCUUAcaacugguuCGAGCa -3'
miRNA:   3'- gUGgCCUUUGUUGGGGUaauu-----GCUCG- -5'
783 5' -48.6 NC_000852.3 + 267602 0.68 0.999705
Target:  5'- uUACCcaGAACAuCgCCAUUGACGAGUa -3'
miRNA:   3'- -GUGGccUUUGUuGgGGUAAUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 270785 0.68 0.999854
Target:  5'- uCACCGGGuccuaAACcauCCCCug-GAcCGAGCg -3'
miRNA:   3'- -GUGGCCU-----UUGuu-GGGGuaaUU-GCUCG- -5'
783 5' -48.6 NC_000852.3 + 272159 0.7 0.998976
Target:  5'- -cCCGGAcgaaucacGGCGguuACCCCGUaagaaaGACGAGCa -3'
miRNA:   3'- guGGCCU--------UUGU---UGGGGUAa-----UUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 273439 0.72 0.995314
Target:  5'- -gUCGGAGAUGAaacaCCCGUU-GCGAGCu -3'
miRNA:   3'- guGGCCUUUGUUg---GGGUAAuUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 287886 0.66 0.999994
Target:  5'- aUACCGauGAuACAcuCCCCGau-ACGAGCa -3'
miRNA:   3'- -GUGGC--CUuUGUu-GGGGUaauUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 304837 0.68 0.999705
Target:  5'- uCACCGGAAGCcaggGACCUCAaccGCGAa- -3'
miRNA:   3'- -GUGGCCUUUG----UUGGGGUaauUGCUcg -5'
783 5' -48.6 NC_000852.3 + 308062 0.75 0.967975
Target:  5'- cCACCGGcAGgAACCCCAcc-AUGAGCc -3'
miRNA:   3'- -GUGGCCuUUgUUGGGGUaauUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 318620 0.7 0.997889
Target:  5'- uCACCGGAGGCAuaACgCCAUUGGauauacugguUGGGUg -3'
miRNA:   3'- -GUGGCCUUUGU--UGgGGUAAUU----------GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.