Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
783 | 5' | -48.6 | NC_000852.3 | + | 1591 | 0.67 | 0.999961 |
Target: 5'- aACCG---ACGACCCCGUUugucgauACGAGa -3' miRNA: 3'- gUGGCcuuUGUUGGGGUAAu------UGCUCg -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 4533 | 0.71 | 0.996549 |
Target: 5'- uGCCGGAGA-AACCCCAUUGcauuuGGCa -3' miRNA: 3'- gUGGCCUUUgUUGGGGUAAUugc--UCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 14218 | 0.72 | 0.99177 |
Target: 5'- uCACUGGAAACAuUCUCGUUGcacaaucaaauGCGAGUa -3' miRNA: 3'- -GUGGCCUUUGUuGGGGUAAU-----------UGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 20623 | 0.67 | 0.999948 |
Target: 5'- uCAUgGGAGACAcgauaaCCAUUGACGGGa -3' miRNA: 3'- -GUGgCCUUUGUugg---GGUAAUUGCUCg -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 24912 | 0.67 | 0.999959 |
Target: 5'- aCGCC-GAAAgAACUCCAaguagccacugGACGAGCg -3' miRNA: 3'- -GUGGcCUUUgUUGGGGUaa---------UUGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 27108 | 0.7 | 0.998763 |
Target: 5'- uCACCGuucccaGAAGCGGCCaUCAUUGcuACGAGUa -3' miRNA: 3'- -GUGGC------CUUUGUUGG-GGUAAU--UGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 27451 | 0.66 | 0.999988 |
Target: 5'- -uCUGGGAACGgugACCCCAguUUGAUGAa- -3' miRNA: 3'- guGGCCUUUGU---UGGGGU--AAUUGCUcg -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 31981 | 0.67 | 0.999947 |
Target: 5'- uCGCUGGGauaaaagGACGACCauuCAU--ACGAGCa -3' miRNA: 3'- -GUGGCCU-------UUGUUGGg--GUAauUGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 33669 | 0.68 | 0.999766 |
Target: 5'- --aCGuGAcGACGaaaGCCCCAUuaUGACGAGCu -3' miRNA: 3'- gugGC-CU-UUGU---UGGGGUA--AUUGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 41438 | 0.74 | 0.980805 |
Target: 5'- aAUCGGAAucACAACuCCCAguucuUUGGCGAGUu -3' miRNA: 3'- gUGGCCUU--UGUUG-GGGU-----AAUUGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 48967 | 0.66 | 0.999994 |
Target: 5'- cCGCCGGuuACAAaaCCGUUGGuCGuGUa -3' miRNA: 3'- -GUGGCCuuUGUUggGGUAAUU-GCuCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 54751 | 0.77 | 0.920856 |
Target: 5'- uGCCGGGuccCAACCCgGUUAGCauuGAGCg -3' miRNA: 3'- gUGGCCUuu-GUUGGGgUAAUUG---CUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 73289 | 0.69 | 0.999436 |
Target: 5'- gCACUGGAuACGaaaccgugGCCCCuggUGACG-GCu -3' miRNA: 3'- -GUGGCCUuUGU--------UGGGGua-AUUGCuCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 73426 | 0.73 | 0.987928 |
Target: 5'- uCAUgGGAAACGGaccaCCUAUggAACGAGCa -3' miRNA: 3'- -GUGgCCUUUGUUg---GGGUAa-UUGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 73629 | 0.73 | 0.984679 |
Target: 5'- gGCUGGGAACAAaaaCCCGacgaaaucAACGAGCa -3' miRNA: 3'- gUGGCCUUUGUUg--GGGUaa------UUGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 81903 | 0.67 | 0.999948 |
Target: 5'- aUAUCGGGAAgAGCCgUugcGACGGGCu -3' miRNA: 3'- -GUGGCCUUUgUUGGgGuaaUUGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 104956 | 0.66 | 0.999991 |
Target: 5'- aACUGGuagaaAGAUAGCCCCAa----GAGCa -3' miRNA: 3'- gUGGCC-----UUUGUUGGGGUaauugCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 112091 | 0.66 | 0.999991 |
Target: 5'- aGCUGGGAGgGuccguaguaccagGCCUCGUgggucUGGCGGGCa -3' miRNA: 3'- gUGGCCUUUgU-------------UGGGGUA-----AUUGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 124705 | 0.66 | 0.999978 |
Target: 5'- uGgCGuuGAUAucuGCCCCGUuguUGACGAGCa -3' miRNA: 3'- gUgGCcuUUGU---UGGGGUA---AUUGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 135831 | 0.66 | 0.999978 |
Target: 5'- aACCG--AGCAGCCCC-UUcGCGAGa -3' miRNA: 3'- gUGGCcuUUGUUGGGGuAAuUGCUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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