Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
783 | 5' | -48.6 | NC_000852.3 | + | 257262 | 1.14 | 0.01805 |
Target: 5'- gCACCGGAAACAACCCCAUUAACGAGCa -3' miRNA: 3'- -GUGGCCUUUGUUGGGGUAAUUGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 329153 | 0.67 | 0.999961 |
Target: 5'- aACCG---ACGACCCCGUUugucgauACGAGa -3' miRNA: 3'- gUGGCcuuUGUUGGGGUAAu------UGCUCg -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 73289 | 0.69 | 0.999436 |
Target: 5'- gCACUGGAuACGaaaccgugGCCCCuggUGACG-GCu -3' miRNA: 3'- -GUGGCCUuUGU--------UGGGGua-AUUGCuCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 164806 | 0.7 | 0.998956 |
Target: 5'- --gCGGGuuCGACCCCcgUcgcuaucauugcuGGCGAGCa -3' miRNA: 3'- gugGCCUuuGUUGGGGuaA-------------UUGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 318620 | 0.7 | 0.997889 |
Target: 5'- uCACCGGAGGCAuaACgCCAUUGGauauacugguUGGGUg -3' miRNA: 3'- -GUGGCCUUUGU--UGgGGUAAUU----------GCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 164902 | 0.72 | 0.995314 |
Target: 5'- uCACCGGuu-CGAUCCCggUAGCGAa- -3' miRNA: 3'- -GUGGCCuuuGUUGGGGuaAUUGCUcg -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 287886 | 0.66 | 0.999994 |
Target: 5'- aUACCGauGAuACAcuCCCCGau-ACGAGCa -3' miRNA: 3'- -GUGGC--CUuUGUu-GGGGUaauUGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 104956 | 0.66 | 0.999991 |
Target: 5'- aACUGGuagaaAGAUAGCCCCAa----GAGCa -3' miRNA: 3'- gUGGCC-----UUUGUUGGGGUaauugCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 193136 | 0.66 | 0.999978 |
Target: 5'- uCGCUGcGAGACAACCCCccgUAuCGAc- -3' miRNA: 3'- -GUGGC-CUUUGUUGGGGua-AUuGCUcg -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 24912 | 0.67 | 0.999959 |
Target: 5'- aCGCC-GAAAgAACUCCAaguagccacugGACGAGCg -3' miRNA: 3'- -GUGGcCUUUgUUGGGGUaa---------UUGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 27108 | 0.7 | 0.998763 |
Target: 5'- uCACCGuucccaGAAGCGGCCaUCAUUGcuACGAGUa -3' miRNA: 3'- -GUGGC------CUUUGUUGG-GGUAAU--UGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 54751 | 0.77 | 0.920856 |
Target: 5'- uGCCGGGuccCAACCCgGUUAGCauuGAGCg -3' miRNA: 3'- gUGGCCUuu-GUUGGGgUAAUUG---CUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 212493 | 0.66 | 0.999978 |
Target: 5'- aCACCGGGggUAGCgCCGgugAAgGuGCc -3' miRNA: 3'- -GUGGCCUuuGUUGgGGUaa-UUgCuCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 308062 | 0.75 | 0.967975 |
Target: 5'- cCACCGGcAGgAACCCCAcc-AUGAGCc -3' miRNA: 3'- -GUGGCCuUUgUUGGGGUaauUGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 304837 | 0.68 | 0.999705 |
Target: 5'- uCACCGGAAGCcaggGACCUCAaccGCGAa- -3' miRNA: 3'- -GUGGCCUUUG----UUGGGGUaauUGCUcg -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 173318 | 0.66 | 0.999984 |
Target: 5'- cCGuuGGaAAACGACCUCAU--ACGGGa -3' miRNA: 3'- -GUggCC-UUUGUUGGGGUAauUGCUCg -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 73629 | 0.73 | 0.984679 |
Target: 5'- gGCUGGGAACAAaaaCCCGacgaaaucAACGAGCa -3' miRNA: 3'- gUGGCCUUUGUUg--GGGUaa------UUGCUCG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 135831 | 0.66 | 0.999978 |
Target: 5'- aACCG--AGCAGCCCC-UUcGCGAGa -3' miRNA: 3'- gUGGCcuUUGUUGGGGuAAuUGCUCg -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 245707 | 0.69 | 0.999308 |
Target: 5'- aCACgGGGAugGACUuuCCAUUGAUGAuGUa -3' miRNA: 3'- -GUGgCCUUugUUGG--GGUAAUUGCU-CG- -5' |
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783 | 5' | -48.6 | NC_000852.3 | + | 267602 | 0.68 | 0.999705 |
Target: 5'- uUACCcaGAACAuCgCCAUUGACGAGUa -3' miRNA: 3'- -GUGGccUUUGUuGgGGUAAUUGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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