miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
783 5' -48.6 NC_000852.3 + 171523 0.74 0.973682
Target:  5'- -cCCGGAAGCAACuCCCA---ACgGAGCu -3'
miRNA:   3'- guGGCCUUUGUUG-GGGUaauUG-CUCG- -5'
783 5' -48.6 NC_000852.3 + 41438 0.74 0.980805
Target:  5'- aAUCGGAAucACAACuCCCAguucuUUGGCGAGUu -3'
miRNA:   3'- gUGGCCUU--UGUUG-GGGU-----AAUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 73426 0.73 0.987928
Target:  5'- uCAUgGGAAACGGaccaCCUAUggAACGAGCa -3'
miRNA:   3'- -GUGgCCUUUGUUg---GGGUAa-UUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 112091 0.66 0.999991
Target:  5'- aGCUGGGAGgGuccguaguaccagGCCUCGUgggucUGGCGGGCa -3'
miRNA:   3'- gUGGCCUUUgU-------------UGGGGUA-----AUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 27451 0.66 0.999988
Target:  5'- -uCUGGGAACGgugACCCCAguUUGAUGAa- -3'
miRNA:   3'- guGGCCUUUGU---UGGGGU--AAUUGCUcg -5'
783 5' -48.6 NC_000852.3 + 250998 0.66 0.999987
Target:  5'- cCACCuGGAAucauagaaauucuaGCAGCUCgUAUggcgUAACGAGCg -3'
miRNA:   3'- -GUGG-CCUU--------------UGUUGGG-GUA----AUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 124705 0.66 0.999978
Target:  5'- uGgCGuuGAUAucuGCCCCGUuguUGACGAGCa -3'
miRNA:   3'- gUgGCcuUUGU---UGGGGUA---AUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 139106 0.67 0.999961
Target:  5'- uCACCGGuauguacuuuAAGCAACUCgG--AACGAGUg -3'
miRNA:   3'- -GUGGCC----------UUUGUUGGGgUaaUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 81903 0.67 0.999948
Target:  5'- aUAUCGGGAAgAGCCgUugcGACGGGCu -3'
miRNA:   3'- -GUGGCCUUUgUUGGgGuaaUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 20623 0.67 0.999948
Target:  5'- uCAUgGGAGACAcgauaaCCAUUGACGGGa -3'
miRNA:   3'- -GUGgCCUUUGUugg---GGUAAUUGCUCg -5'
783 5' -48.6 NC_000852.3 + 31981 0.67 0.999947
Target:  5'- uCGCUGGGauaaaagGACGACCauuCAU--ACGAGCa -3'
miRNA:   3'- -GUGGCCU-------UUGUUGGg--GUAauUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 258670 0.67 0.999945
Target:  5'- aGCgGGAAAUAACCUUAcaacugguuCGAGCa -3'
miRNA:   3'- gUGgCCUUUGUUGGGGUaauu-----GCUCG- -5'
783 5' -48.6 NC_000852.3 + 270785 0.68 0.999854
Target:  5'- uCACCGGGuccuaAACcauCCCCug-GAcCGAGCg -3'
miRNA:   3'- -GUGGCCU-----UUGuu-GGGGuaaUU-GCUCG- -5'
783 5' -48.6 NC_000852.3 + 33669 0.68 0.999766
Target:  5'- --aCGuGAcGACGaaaGCCCCAUuaUGACGAGCu -3'
miRNA:   3'- gugGC-CU-UUGU---UGGGGUA--AUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 267602 0.68 0.999705
Target:  5'- uUACCcaGAACAuCgCCAUUGACGAGUa -3'
miRNA:   3'- -GUGGccUUUGUuGgGGUAAUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 245707 0.69 0.999308
Target:  5'- aCACgGGGAugGACUuuCCAUUGAUGAuGUa -3'
miRNA:   3'- -GUGgCCUUugUUGG--GGUAAUUGCU-CG- -5'
783 5' -48.6 NC_000852.3 + 4533 0.71 0.996549
Target:  5'- uGCCGGAGA-AACCCCAUUGcauuuGGCa -3'
miRNA:   3'- gUGGCCUUUgUUGGGGUAAUugc--UCG- -5'
783 5' -48.6 NC_000852.3 + 217980 0.72 0.995314
Target:  5'- uCACCGGGAGCugaAAUCCCA--GACGAa- -3'
miRNA:   3'- -GUGGCCUUUG---UUGGGGUaaUUGCUcg -5'
783 5' -48.6 NC_000852.3 + 273439 0.72 0.995314
Target:  5'- -gUCGGAGAUGAaacaCCCGUU-GCGAGCu -3'
miRNA:   3'- guGGCCUUUGUUg---GGGUAAuUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 14218 0.72 0.99177
Target:  5'- uCACUGGAAACAuUCUCGUUGcacaaucaaauGCGAGUa -3'
miRNA:   3'- -GUGGCCUUUGUuGGGGUAAU-----------UGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.