miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7834 3' -57.5 NC_001973.1 + 63179 0.66 0.875703
Target:  5'- ------cUCGCGCg-GACaGAGCGCGCu -3'
miRNA:   3'- uaccagaAGCGCGagCUG-CUCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 81767 0.66 0.875703
Target:  5'- -aGGcCgcgaucaugUCGCGCUCGGCGcGaaaGUGCa -3'
miRNA:   3'- uaCCaGa--------AGCGCGAGCUGCuCg--CGCG- -5'
7834 3' -57.5 NC_001973.1 + 19686 0.66 0.875703
Target:  5'- ------aUCGCGcCUCGGCcGGCGCGUa -3'
miRNA:   3'- uaccagaAGCGC-GAGCUGcUCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 56335 0.66 0.875703
Target:  5'- -cGG-CgcCGCGCUCG-CGGcCGCGCu -3'
miRNA:   3'- uaCCaGaaGCGCGAGCuGCUcGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 83942 0.66 0.875703
Target:  5'- -cGGcg--CGcCGCUCGgagGCGGGCGCGUc -3'
miRNA:   3'- uaCCagaaGC-GCGAGC---UGCUCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 123728 0.66 0.875703
Target:  5'- gAUGGgUUUgGCGCgCGGCGAGauCGCa -3'
miRNA:   3'- -UACCaGAAgCGCGaGCUGCUCgcGCG- -5'
7834 3' -57.5 NC_001973.1 + 53051 0.66 0.87499
Target:  5'- gGUGG-CUUUggaagaaggGCGCccgccugUUGACGAGCGuCGCg -3'
miRNA:   3'- -UACCaGAAG---------CGCG-------AGCUGCUCGC-GCG- -5'
7834 3' -57.5 NC_001973.1 + 100139 0.66 0.869214
Target:  5'- gGUGGUCgaaCGUGUccacgaUCGugguguaaaaauuguCGAGCGCGCc -3'
miRNA:   3'- -UACCAGaa-GCGCG------AGCu--------------GCUCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 109463 0.66 0.868483
Target:  5'- -aGGUCga-GCGUggCGACGuuGCGCGa -3'
miRNA:   3'- uaCCAGaagCGCGa-GCUGCu-CGCGCg -5'
7834 3' -57.5 NC_001973.1 + 58484 0.66 0.868483
Target:  5'- -------aCGUGCUCGGCGGGC-CGCu -3'
miRNA:   3'- uaccagaaGCGCGAGCUGCUCGcGCG- -5'
7834 3' -57.5 NC_001973.1 + 109142 0.66 0.868483
Target:  5'- uUGGgCgcCGC-CUCGACGAGcCGgGCg -3'
miRNA:   3'- uACCaGaaGCGcGAGCUGCUC-GCgCG- -5'
7834 3' -57.5 NC_001973.1 + 121641 0.66 0.868483
Target:  5'- uUGGcCgacgCGCGCcgccUCGAaGGGCGCGUc -3'
miRNA:   3'- uACCaGaa--GCGCG----AGCUgCUCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 124301 0.66 0.864052
Target:  5'- aAUGGUacgucggcggcaCGCGCUCGAgCGAGC-UGCa -3'
miRNA:   3'- -UACCAgaa---------GCGCGAGCU-GCUCGcGCG- -5'
7834 3' -57.5 NC_001973.1 + 133386 0.66 0.861057
Target:  5'- uUGGUg--CGCGCgUCGAUGcgcagaucggccAGCGUGCg -3'
miRNA:   3'- uACCAgaaGCGCG-AGCUGC------------UCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 7076 0.66 0.861057
Target:  5'- cUGGUCgagCGCGagUUGAgucCGGcGCGCGCg -3'
miRNA:   3'- uACCAGaa-GCGCg-AGCU---GCU-CGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 46212 0.66 0.861057
Target:  5'- ----gUUUCGCGCgCGACGGccgggucauguGCGCGCu -3'
miRNA:   3'- uaccaGAAGCGCGaGCUGCU-----------CGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 73271 0.66 0.861057
Target:  5'- uUGGaaUUUUCGCGCcgggaGugGAaacucGCGCGCg -3'
miRNA:   3'- uACC--AGAAGCGCGag---CugCU-----CGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 131002 0.66 0.861057
Target:  5'- -aGGUCaacaUCGUGC-CGaACGAaCGCGCg -3'
miRNA:   3'- uaCCAGa---AGCGCGaGC-UGCUcGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 95017 0.66 0.861057
Target:  5'- -cGG-CUUCGUGC-CGAUGuGCG-GCg -3'
miRNA:   3'- uaCCaGAAGCGCGaGCUGCuCGCgCG- -5'
7834 3' -57.5 NC_001973.1 + 26519 0.66 0.85343
Target:  5'- -------aCGCGCUCGACGAcGUaGCGCu -3'
miRNA:   3'- uaccagaaGCGCGAGCUGCU-CG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.