miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7836 3' -58.9 NC_001973.1 + 140371 0.66 0.853556
Target:  5'- cGUCGucgCCGCcGAGCGGCugGcucuCGAGCc -3'
miRNA:   3'- -CGGCca-GGUG-CUUGCCGugCc---GCUCG- -5'
7836 3' -58.9 NC_001973.1 + 81180 0.66 0.853556
Target:  5'- cGUCgGGUCgGCG-GCGGCgACGGUGuuggucAGCg -3'
miRNA:   3'- -CGG-CCAGgUGCuUGCCG-UGCCGC------UCG- -5'
7836 3' -58.9 NC_001973.1 + 74789 0.66 0.853556
Target:  5'- -gCGGUcgCCGgGGugGGCGCGcacGCGAGg -3'
miRNA:   3'- cgGCCA--GGUgCUugCCGUGC---CGCUCg -5'
7836 3' -58.9 NC_001973.1 + 6504 0.66 0.853556
Target:  5'- aCCGG-CU--GGGCGGCGCGGgCGuGCc -3'
miRNA:   3'- cGGCCaGGugCUUGCCGUGCC-GCuCG- -5'
7836 3' -58.9 NC_001973.1 + 87427 0.66 0.849
Target:  5'- uGUCGG-CCGCgucgauagccaugggGAugGGCccgACGGCGcGCa -3'
miRNA:   3'- -CGGCCaGGUG---------------CUugCCG---UGCCGCuCG- -5'
7836 3' -58.9 NC_001973.1 + 111932 0.66 0.849
Target:  5'- -gUGGUgCGCG-GCGGCgacuucuccgacccgGCGGcCGAGCg -3'
miRNA:   3'- cgGCCAgGUGCuUGCCG---------------UGCC-GCUCG- -5'
7836 3' -58.9 NC_001973.1 + 95807 0.66 0.849
Target:  5'- -aCGGcuaCGCGGACGGCaacccguucacgggcGCGGCGAcggGCc -3'
miRNA:   3'- cgGCCag-GUGCUUGCCG---------------UGCCGCU---CG- -5'
7836 3' -58.9 NC_001973.1 + 39415 0.66 0.845926
Target:  5'- gGUCGG-CCGCGGugaGGCGCgucgcguccagGGCGAcGCc -3'
miRNA:   3'- -CGGCCaGGUGCUug-CCGUG-----------CCGCU-CG- -5'
7836 3' -58.9 NC_001973.1 + 74284 0.66 0.845926
Target:  5'- gGCCGGcgCCguGCGuuCGGCACGGaucGCc -3'
miRNA:   3'- -CGGCCa-GG--UGCuuGCCGUGCCgcuCG- -5'
7836 3' -58.9 NC_001973.1 + 123275 0.66 0.845926
Target:  5'- cGgCGGUaCAggcCGGGCaGGCGCGGCcAGCg -3'
miRNA:   3'- -CgGCCAgGU---GCUUG-CCGUGCCGcUCG- -5'
7836 3' -58.9 NC_001973.1 + 4902 0.66 0.845926
Target:  5'- cGCCGGgUUCGuuauCGuGACGGaaacguCGGCGGGCu -3'
miRNA:   3'- -CGGCC-AGGU----GC-UUGCCgu----GCCGCUCG- -5'
7836 3' -58.9 NC_001973.1 + 76460 0.66 0.845926
Target:  5'- cGCCaaggaCAUGGGCGGCuCGGCGGuGCc -3'
miRNA:   3'- -CGGccag-GUGCUUGCCGuGCCGCU-CG- -5'
7836 3' -58.9 NC_001973.1 + 23382 0.66 0.845926
Target:  5'- uCCGaGUaCUuuGCGGGCGuG-ACGGCGAGCg -3'
miRNA:   3'- cGGC-CA-GG--UGCUUGC-CgUGCCGCUCG- -5'
7836 3' -58.9 NC_001973.1 + 14113 0.66 0.838117
Target:  5'- aGCCGcUCCACGGauACGGCcccCGGUccGCc -3'
miRNA:   3'- -CGGCcAGGUGCU--UGCCGu--GCCGcuCG- -5'
7836 3' -58.9 NC_001973.1 + 103716 0.66 0.838117
Target:  5'- uGCCGG-CC-CG---GGCGCGGCGAc- -3'
miRNA:   3'- -CGGCCaGGuGCuugCCGUGCCGCUcg -5'
7836 3' -58.9 NC_001973.1 + 134381 0.66 0.838117
Target:  5'- gGCCGauuauUCCGCcuccuuaucgaGAGCGGC-CGGCcGGCg -3'
miRNA:   3'- -CGGCc----AGGUG-----------CUUGCCGuGCCGcUCG- -5'
7836 3' -58.9 NC_001973.1 + 64388 0.66 0.838117
Target:  5'- -gCGG-CCAUcgaGAAUuGCAUGGUGAGCg -3'
miRNA:   3'- cgGCCaGGUG---CUUGcCGUGCCGCUCG- -5'
7836 3' -58.9 NC_001973.1 + 97975 0.66 0.838117
Target:  5'- gGCaCGGg-CACGAcGCGGuCGCGGUcGGCg -3'
miRNA:   3'- -CG-GCCagGUGCU-UGCC-GUGCCGcUCG- -5'
7836 3' -58.9 NC_001973.1 + 126817 0.66 0.838117
Target:  5'- cGCCGcuaguGUCCAUuuuAACGGC-CGGCGcGUa -3'
miRNA:   3'- -CGGC-----CAGGUGc--UUGCCGuGCCGCuCG- -5'
7836 3' -58.9 NC_001973.1 + 113058 0.66 0.830133
Target:  5'- cUUGGUCCuCGAu--GCGCGGCG-GCg -3'
miRNA:   3'- cGGCCAGGuGCUugcCGUGCCGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.