miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7841 5' -55.3 NC_001973.1 + 4036 1.11 0.003348
Target:  5'- uCGAACGUGUACACGGGGCGCACGUCCc -3'
miRNA:   3'- -GCUUGCACAUGUGCCCCGCGUGCAGG- -5'
7841 5' -55.3 NC_001973.1 + 94654 0.8 0.309677
Target:  5'- gGAGCGUGUACACGggcgagccGGGCGaCACGgCCu -3'
miRNA:   3'- gCUUGCACAUGUGC--------CCCGC-GUGCaGG- -5'
7841 5' -55.3 NC_001973.1 + 134334 0.76 0.472954
Target:  5'- cCGGGCGUGUACGUGGuGGCGCucgACG-CCg -3'
miRNA:   3'- -GCUUGCACAUGUGCC-CCGCG---UGCaGG- -5'
7841 5' -55.3 NC_001973.1 + 7927 0.75 0.509618
Target:  5'- gGAgcGCGUGUGCGCGGccggcguGGUGCACGcgCCc -3'
miRNA:   3'- gCU--UGCACAUGUGCC-------CCGCGUGCa-GG- -5'
7841 5' -55.3 NC_001973.1 + 132436 0.75 0.510574
Target:  5'- gCGAGCGUGguggagGCgccgGCGGGGCGCGgccuCGUCg -3'
miRNA:   3'- -GCUUGCACa-----UG----UGCCCCGCGU----GCAGg -5'
7841 5' -55.3 NC_001973.1 + 109559 0.74 0.596067
Target:  5'- gCGAACGccgGCGCGGGGCGgGuuucgggcgcgagcCGUCCa -3'
miRNA:   3'- -GCUUGCacaUGUGCCCCGCgU--------------GCAGG- -5'
7841 5' -55.3 NC_001973.1 + 70753 0.74 0.608103
Target:  5'- aGGACGaagucauggcacuUGUGaGCGGGGCGC-UGUCCa -3'
miRNA:   3'- gCUUGC-------------ACAUgUGCCCCGCGuGCAGG- -5'
7841 5' -55.3 NC_001973.1 + 103926 0.73 0.618152
Target:  5'- gGAGCGcGUcgucgcgGCGCGGGGCGUGcCGUCg -3'
miRNA:   3'- gCUUGCaCA-------UGUGCCCCGCGU-GCAGg -5'
7841 5' -55.3 NC_001973.1 + 96885 0.73 0.629218
Target:  5'- gCGGAUcUGUGCGCGGcGG-GCGCGUCg -3'
miRNA:   3'- -GCUUGcACAUGUGCC-CCgCGUGCAGg -5'
7841 5' -55.3 NC_001973.1 + 152331 0.73 0.659382
Target:  5'- uGGACGcgGUGCgcggGCGGGGCGCgauaGCG-CCg -3'
miRNA:   3'- gCUUGCa-CAUG----UGCCCCGCG----UGCaGG- -5'
7841 5' -55.3 NC_001973.1 + 24127 0.73 0.659382
Target:  5'- cCGGGCGagcuCGCGGGuGCGCGCG-CCg -3'
miRNA:   3'- -GCUUGCacauGUGCCC-CGCGUGCaGG- -5'
7841 5' -55.3 NC_001973.1 + 152393 0.73 0.669405
Target:  5'- gCGGGCGg--GCGCGGGGCgGCGCG-Ca -3'
miRNA:   3'- -GCUUGCacaUGUGCCCCG-CGUGCaGg -5'
7841 5' -55.3 NC_001973.1 + 87109 0.72 0.689354
Target:  5'- aCGuguGCGcGUGCGCGGcGuGCGCGCG-CCg -3'
miRNA:   3'- -GCu--UGCaCAUGUGCC-C-CGCGUGCaGG- -5'
7841 5' -55.3 NC_001973.1 + 97201 0.72 0.699264
Target:  5'- ---cCGUGUACGCGuuagaGGCGCGCGUgCCc -3'
miRNA:   3'- gcuuGCACAUGUGCc----CCGCGUGCA-GG- -5'
7841 5' -55.3 NC_001973.1 + 146379 0.72 0.699264
Target:  5'- uGAGCGUGUGCccgGCGGGcagguCGCugAUGUCCa -3'
miRNA:   3'- gCUUGCACAUG---UGCCCc----GCG--UGCAGG- -5'
7841 5' -55.3 NC_001973.1 + 18530 0.72 0.70912
Target:  5'- aCGGGCGU----ACGGGGCGCGCcggCCg -3'
miRNA:   3'- -GCUUGCAcaugUGCCCCGCGUGca-GG- -5'
7841 5' -55.3 NC_001973.1 + 159805 0.72 0.715981
Target:  5'- aCGAACuUGUAgCAucuguugggccuggUGGGGCGCACGUUg -3'
miRNA:   3'- -GCUUGcACAU-GU--------------GCCCCGCGUGCAGg -5'
7841 5' -55.3 NC_001973.1 + 123353 0.71 0.738273
Target:  5'- aCGGACGgccGUuuGCGGGGauCGCACG-CCg -3'
miRNA:   3'- -GCUUGCa--CAugUGCCCC--GCGUGCaGG- -5'
7841 5' -55.3 NC_001973.1 + 121225 0.71 0.757276
Target:  5'- gCGAGCGcc-ACGCGGcGGCGCggcGCGUCg -3'
miRNA:   3'- -GCUUGCacaUGUGCC-CCGCG---UGCAGg -5'
7841 5' -55.3 NC_001973.1 + 140872 0.71 0.775851
Target:  5'- aCGGGCGUGcgcaucUGCGCGGcgucGCGCGCGaCCc -3'
miRNA:   3'- -GCUUGCAC------AUGUGCCc---CGCGUGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.