miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7841 5' -55.3 NC_001973.1 + 4036 1.11 0.003348
Target:  5'- uCGAACGUGUACACGGGGCGCACGUCCc -3'
miRNA:   3'- -GCUUGCACAUGUGCCCCGCGUGCAGG- -5'
7841 5' -55.3 NC_001973.1 + 6102 0.7 0.784957
Target:  5'- uGAACGUGcGCAUGacGGCGCGCGagggcgCCg -3'
miRNA:   3'- gCUUGCACaUGUGCc-CCGCGUGCa-----GG- -5'
7841 5' -55.3 NC_001973.1 + 6405 0.71 0.775851
Target:  5'- uGAugGccgaGUGCGCGGcGGCGgCGCG-CCg -3'
miRNA:   3'- gCUugCa---CAUGUGCC-CCGC-GUGCaGG- -5'
7841 5' -55.3 NC_001973.1 + 6492 0.7 0.79393
Target:  5'- aGGGCGUGcuguaccgGCugGGcGGCGCggGCGUgCCg -3'
miRNA:   3'- gCUUGCACa-------UGugCC-CCGCG--UGCA-GG- -5'
7841 5' -55.3 NC_001973.1 + 7927 0.75 0.509618
Target:  5'- gGAgcGCGUGUGCGCGGccggcguGGUGCACGcgCCc -3'
miRNA:   3'- gCU--UGCACAUGUGCC-------CCGCGUGCa-GG- -5'
7841 5' -55.3 NC_001973.1 + 8281 0.66 0.944049
Target:  5'- uGGACGacugcggcuuccUGUACACGGcGGCGgagGCG-CCg -3'
miRNA:   3'- gCUUGC------------ACAUGUGCC-CCGCg--UGCaGG- -5'
7841 5' -55.3 NC_001973.1 + 14362 0.68 0.881645
Target:  5'- -cGGCGUGgucgACGGGGCGCgGCGaggCCg -3'
miRNA:   3'- gcUUGCACaug-UGCCCCGCG-UGCa--GG- -5'
7841 5' -55.3 NC_001973.1 + 18530 0.72 0.70912
Target:  5'- aCGGGCGU----ACGGGGCGCGCcggCCg -3'
miRNA:   3'- -GCUUGCAcaugUGCCCCGCGUGca-GG- -5'
7841 5' -55.3 NC_001973.1 + 24127 0.73 0.659382
Target:  5'- cCGGGCGagcuCGCGGGuGCGCGCG-CCg -3'
miRNA:   3'- -GCUUGCacauGUGCCC-CGCGUGCaGG- -5'
7841 5' -55.3 NC_001973.1 + 35909 0.69 0.867404
Target:  5'- uCGcACGUGUACuucgaaGGGGCGC-CGagcugCCg -3'
miRNA:   3'- -GCuUGCACAUGug----CCCCGCGuGCa----GG- -5'
7841 5' -55.3 NC_001973.1 + 36130 0.66 0.939522
Target:  5'- gCGGACGaauaucUGUacgGCAUGGGcagcGCGCugGUCg -3'
miRNA:   3'- -GCUUGC------ACA---UGUGCCC----CGCGugCAGg -5'
7841 5' -55.3 NC_001973.1 + 42603 0.69 0.828329
Target:  5'- aGGAgGUGcgGCGCGaGGGCGCG-GUCg -3'
miRNA:   3'- gCUUgCACa-UGUGC-CCCGCGUgCAGg -5'
7841 5' -55.3 NC_001973.1 + 44730 0.68 0.888446
Target:  5'- uGAACGUGUACGCGGcGUcCGUGUUCu -3'
miRNA:   3'- gCUUGCACAUGUGCCcCGcGUGCAGG- -5'
7841 5' -55.3 NC_001973.1 + 44760 0.66 0.948348
Target:  5'- uGAACGcgGUGC-CGGGGCacagcgguuuGCugGCGUCg -3'
miRNA:   3'- gCUUGCa-CAUGuGCCCCG----------CG--UGCAGg -5'
7841 5' -55.3 NC_001973.1 + 45643 0.67 0.907525
Target:  5'- uCGAGCGcggcgucGUACGCGGccUGCGCGUCUc -3'
miRNA:   3'- -GCUUGCa------CAUGUGCCccGCGUGCAGG- -5'
7841 5' -55.3 NC_001973.1 + 45856 0.69 0.859975
Target:  5'- uGGGCGU---CGCGGGcGCGCGC-UCCu -3'
miRNA:   3'- gCUUGCAcauGUGCCC-CGCGUGcAGG- -5'
7841 5' -55.3 NC_001973.1 + 49270 0.67 0.934766
Target:  5'- aCGAccACGc-UGCACGcGGCGCugGUCa -3'
miRNA:   3'- -GCU--UGCacAUGUGCcCCGCGugCAGg -5'
7841 5' -55.3 NC_001973.1 + 53492 0.67 0.931802
Target:  5'- aGAACGggaagcggucgguguUGUACACGGccGCGC-CGUCg -3'
miRNA:   3'- gCUUGC---------------ACAUGUGCCc-CGCGuGCAGg -5'
7841 5' -55.3 NC_001973.1 + 61111 0.69 0.867404
Target:  5'- gGAGCagcgGCgGCGGGGCGCgGCGUCg -3'
miRNA:   3'- gCUUGcacaUG-UGCCCCGCG-UGCAGg -5'
7841 5' -55.3 NC_001973.1 + 70137 0.66 0.956276
Target:  5'- uCGAGCaugGUGCGCaGcGCGUccGCGUCCg -3'
miRNA:   3'- -GCUUGca-CAUGUGcCcCGCG--UGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.