miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7849 3' -57.8 NC_001973.1 + 21416 0.76 0.3057
Target:  5'- cGUUGAuGGAgaacGCGCAGCCggaccCGACCGCCg -3'
miRNA:   3'- cUAGCU-CCU----CGCGUCGGa----GCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 28593 0.76 0.334339
Target:  5'- --cCGGcGGGGCGCGGCCUCGucggGCuCGCCg -3'
miRNA:   3'- cuaGCU-CCUCGCGUCGGAGC----UG-GUGG- -5'
7849 3' -57.8 NC_001973.1 + 39225 0.75 0.389045
Target:  5'- aAUCGAcGGAGUacacGCGGCCcgaaccgguuUCGGCCGCCg -3'
miRNA:   3'- cUAGCU-CCUCG----CGUCGG----------AGCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 39699 0.75 0.389045
Target:  5'- cGGUCGcGGucguGCGCGaCCUCGACCAUCu -3'
miRNA:   3'- -CUAGCuCCu---CGCGUcGGAGCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 123275 0.74 0.422831
Target:  5'- aGAUCGGGGGGCGCcGCCgcgCGG-CGCUc -3'
miRNA:   3'- -CUAGCUCCUCGCGuCGGa--GCUgGUGG- -5'
7849 3' -57.8 NC_001973.1 + 109383 0.74 0.435066
Target:  5'- --cCGAGGAcgcggaggcgcgcgcGCGCGaucuCCUCGACCGCCa -3'
miRNA:   3'- cuaGCUCCU---------------CGCGUc---GGAGCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 24790 0.73 0.449296
Target:  5'- uGAUacaGuAGGAG-GCGGUCUUGACCGCCu -3'
miRNA:   3'- -CUAg--C-UCCUCgCGUCGGAGCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 65966 0.73 0.47665
Target:  5'- -uUCGAGGcGCuGCAGCgCUCGugCGCg -3'
miRNA:   3'- cuAGCUCCuCG-CGUCG-GAGCugGUGg -5'
7849 3' -57.8 NC_001973.1 + 120824 0.73 0.48595
Target:  5'- --gCGAucAGCGCGuaguccacgaacGCCUCGACCACCa -3'
miRNA:   3'- cuaGCUccUCGCGU------------CGGAGCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 126002 0.72 0.504803
Target:  5'- -uUCGAGGcGGCGCAG-UUCGAuuuCCGCCg -3'
miRNA:   3'- cuAGCUCC-UCGCGUCgGAGCU---GGUGG- -5'
7849 3' -57.8 NC_001973.1 + 95606 0.72 0.53365
Target:  5'- uGAUCGccaacucGCGCuGCCUCGACUGCCa -3'
miRNA:   3'- -CUAGCuccu---CGCGuCGGAGCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 124364 0.72 0.543398
Target:  5'- --aCGAGGAcaagccucGCGCGGCCgUCGuCCGCUu -3'
miRNA:   3'- cuaGCUCCU--------CGCGUCGG-AGCuGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 156738 0.71 0.563061
Target:  5'- uGGUCGAuGAGCGCGcccagcccGCgCUCGACgACCu -3'
miRNA:   3'- -CUAGCUcCUCGCGU--------CG-GAGCUGgUGG- -5'
7849 3' -57.8 NC_001973.1 + 39106 0.71 0.582911
Target:  5'- --aCGAGcGAGCGCAGCaaucgcuuuCUCGACgacgCGCCa -3'
miRNA:   3'- cuaGCUC-CUCGCGUCG---------GAGCUG----GUGG- -5'
7849 3' -57.8 NC_001973.1 + 65579 0.71 0.582911
Target:  5'- -cUCGAGGAGCuGCGGCucaugCUCGACgaGCUg -3'
miRNA:   3'- cuAGCUCCUCG-CGUCG-----GAGCUGg-UGG- -5'
7849 3' -57.8 NC_001973.1 + 74302 0.7 0.64306
Target:  5'- --aCGGcGGcGCGCGGCCUCGuuCCGCg -3'
miRNA:   3'- cuaGCU-CCuCGCGUCGGAGCu-GGUGg -5'
7849 3' -57.8 NC_001973.1 + 111142 0.7 0.647077
Target:  5'- --aCGAcGAGCGCGGUcaaaaggagcaagcgCUCGAUCACCu -3'
miRNA:   3'- cuaGCUcCUCGCGUCG---------------GAGCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 96930 0.7 0.653099
Target:  5'- -cUCGAcGGGGCGguGCCgcaucaaCGACCGgCu -3'
miRNA:   3'- cuAGCU-CCUCGCguCGGa------GCUGGUgG- -5'
7849 3' -57.8 NC_001973.1 + 99741 0.7 0.663122
Target:  5'- gGAUgaAGGAG-GCGGCCUCG-UCGCCg -3'
miRNA:   3'- -CUAgcUCCUCgCGUCGGAGCuGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 147272 0.69 0.673121
Target:  5'- -uUUGGGGcAGCGCuuGCCU-GAUCGCCg -3'
miRNA:   3'- cuAGCUCC-UCGCGu-CGGAgCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.