miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7849 3' -57.8 NC_001973.1 + 981 0.66 0.847244
Target:  5'- uGGUCGAGGcuGCGCu-CCUCGAUCucguGCUg -3'
miRNA:   3'- -CUAGCUCCu-CGCGucGGAGCUGG----UGG- -5'
7849 3' -57.8 NC_001973.1 + 2312 0.67 0.814451
Target:  5'- --gCGAGGAGUcCAGCUgaagcCGGCgACCg -3'
miRNA:   3'- cuaGCUCCUCGcGUCGGa----GCUGgUGG- -5'
7849 3' -57.8 NC_001973.1 + 3173 0.67 0.817853
Target:  5'- --aCGAGGcGCuGCGGCUcgugucggaggucgCGGCCGCCg -3'
miRNA:   3'- cuaGCUCCuCG-CGUCGGa-------------GCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 5144 0.69 0.689049
Target:  5'- uGGUCGGGGugcccGGCGauuacgaacacaaGGCCUCGucguCCACCc -3'
miRNA:   3'- -CUAGCUCC-----UCGCg------------UCGGAGCu---GGUGG- -5'
7849 3' -57.8 NC_001973.1 + 20981 0.67 0.779109
Target:  5'- cAUCGcGGAcGCGCAGCgUC-ACCugCu -3'
miRNA:   3'- cUAGCuCCU-CGCGUCGgAGcUGGugG- -5'
7849 3' -57.8 NC_001973.1 + 21416 0.76 0.3057
Target:  5'- cGUUGAuGGAgaacGCGCAGCCggaccCGACCGCCg -3'
miRNA:   3'- cUAGCU-CCU----CGCGUCGGa----GCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 24790 0.73 0.449296
Target:  5'- uGAUacaGuAGGAG-GCGGUCUUGACCGCCu -3'
miRNA:   3'- -CUAg--C-UCCUCgCGUCGGAGCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 25120 0.68 0.769935
Target:  5'- ---aGAGcGGGCGCGGCgaUGGCgCGCCa -3'
miRNA:   3'- cuagCUC-CUCGCGUCGgaGCUG-GUGG- -5'
7849 3' -57.8 NC_001973.1 + 26193 0.68 0.760643
Target:  5'- -cUUGGGcuggcaGAGCacGCAGCCUCGGCCGUCg -3'
miRNA:   3'- cuAGCUC------CUCG--CGUCGGAGCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 26685 0.69 0.693014
Target:  5'- --cCGAGGGGCGauuGCaCUCGGCCGa- -3'
miRNA:   3'- cuaGCUCCUCGCgu-CG-GAGCUGGUgg -5'
7849 3' -57.8 NC_001973.1 + 28593 0.76 0.334339
Target:  5'- --cCGGcGGGGCGCGGCCUCGucggGCuCGCCg -3'
miRNA:   3'- cuaGCU-CCUCGCGUCGGAGC----UG-GUGG- -5'
7849 3' -57.8 NC_001973.1 + 29860 0.68 0.741738
Target:  5'- -uUCGAGG-GCGUgccccuugAGcCCUCG-CCGCCu -3'
miRNA:   3'- cuAGCUCCuCGCG--------UC-GGAGCuGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 36243 0.66 0.831196
Target:  5'- --gCGAGGGcCGgGGCCUCGAUCGg- -3'
miRNA:   3'- cuaGCUCCUcGCgUCGGAGCUGGUgg -5'
7849 3' -57.8 NC_001973.1 + 36681 0.66 0.854223
Target:  5'- -cUCGAGacgauuucggacaGGGCGCAGCgCgcCGGCCGCg -3'
miRNA:   3'- cuAGCUC-------------CUCGCGUCG-Ga-GCUGGUGg -5'
7849 3' -57.8 NC_001973.1 + 36724 0.67 0.788155
Target:  5'- -cUCGAGcGAGCuGCAcGCCgacgUGGCgGCCg -3'
miRNA:   3'- cuAGCUC-CUCG-CGU-CGGa---GCUGgUGG- -5'
7849 3' -57.8 NC_001973.1 + 39106 0.71 0.582911
Target:  5'- --aCGAGcGAGCGCAGCaaucgcuuuCUCGACgacgCGCCa -3'
miRNA:   3'- cuaGCUC-CUCGCGUCG---------GAGCUG----GUGG- -5'
7849 3' -57.8 NC_001973.1 + 39225 0.75 0.389045
Target:  5'- aAUCGAcGGAGUacacGCGGCCcgaaccgguuUCGGCCGCCg -3'
miRNA:   3'- cUAGCU-CCUCG----CGUCGG----------AGCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 39699 0.75 0.389045
Target:  5'- cGGUCGcGGucguGCGCGaCCUCGACCAUCu -3'
miRNA:   3'- -CUAGCuCCu---CGCGUcGGAGCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 40109 0.68 0.760643
Target:  5'- -uUUGucGAGCGCGGUCUgcaCGGCgGCCa -3'
miRNA:   3'- cuAGCucCUCGCGUCGGA---GCUGgUGG- -5'
7849 3' -57.8 NC_001973.1 + 43563 0.67 0.779109
Target:  5'- --cCGAGGGcCGUaucaugauGGCUUUGGCCGCCg -3'
miRNA:   3'- cuaGCUCCUcGCG--------UCGGAGCUGGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.