miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7901 3' -58.8 NC_001973.1 + 30351 0.75 0.323915
Target:  5'- ---cGCAGGcCgaguucgGGCCGCCGGCGCGg -3'
miRNA:   3'- uccaCGUCCuGaa-----CCGGCGGUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 137274 0.74 0.361611
Target:  5'- cGGcgGCGGGGCUcGGCCGC--GCGCGu -3'
miRNA:   3'- uCCa-CGUCCUGAaCCGGCGguUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 28151 0.72 0.436781
Target:  5'- ---aGUAGGGCUUGgacgucgcGCCGCCGACGCc -3'
miRNA:   3'- uccaCGUCCUGAAC--------CGGCGGUUGCGc -5'
7901 3' -58.8 NC_001973.1 + 135659 0.72 0.463766
Target:  5'- aAGaUGCAGGugUUGGCCGUgG-CGCu -3'
miRNA:   3'- -UCcACGUCCugAACCGGCGgUuGCGc -5'
7901 3' -58.8 NC_001973.1 + 153420 0.71 0.514407
Target:  5'- cGGGUGCAGGACcgacgcccaaccgGGuCCGUC-GCGCGc -3'
miRNA:   3'- -UCCACGUCCUGaa-----------CC-GGCGGuUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 96754 0.71 0.520177
Target:  5'- cGGaGCGccggcgagucGGGCggcgUGGCgGCCAACGCGg -3'
miRNA:   3'- uCCaCGU----------CCUGa---ACCGgCGGUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 5737 0.71 0.520177
Target:  5'- uGGUGaCcGGACg-GGCCGCCGAaGCGg -3'
miRNA:   3'- uCCAC-GuCCUGaaCCGGCGGUUgCGC- -5'
7901 3' -58.8 NC_001973.1 + 124262 0.71 0.529849
Target:  5'- -uGUGCAuGGACgugGGCCcgucgGCCGACGCu -3'
miRNA:   3'- ucCACGU-CCUGaa-CCGG-----CGGUUGCGc -5'
7901 3' -58.8 NC_001973.1 + 96863 0.7 0.539587
Target:  5'- -cGUGCAGGAaaacguggUGGCCGCgGaucuguGCGCGg -3'
miRNA:   3'- ucCACGUCCUga------ACCGGCGgU------UGCGC- -5'
7901 3' -58.8 NC_001973.1 + 94710 0.7 0.579081
Target:  5'- cAGGUGUggguGGGCgaGGCgGCCGgcaaGCGCGc -3'
miRNA:   3'- -UCCACGu---CCUGaaCCGgCGGU----UGCGC- -5'
7901 3' -58.8 NC_001973.1 + 29763 0.69 0.629218
Target:  5'- -uGUGCGaGACgcuccaggcgcUGGCCGUCGACGCGa -3'
miRNA:   3'- ucCACGUcCUGa----------ACCGGCGGUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 152337 0.69 0.648333
Target:  5'- cGGUGCGcGGGCggGGCgcgauagCGCC-GCGCGa -3'
miRNA:   3'- uCCACGU-CCUGaaCCG-------GCGGuUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 50183 0.69 0.649338
Target:  5'- uGGcGUGCAcGACUUgcucGGCCGUguACGCGu -3'
miRNA:   3'- -UC-CACGUcCUGAA----CCGGCGguUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 5151 0.68 0.669405
Target:  5'- uGGUGCAGGcccaGCUgguUGGUguCCGGCGCGa -3'
miRNA:   3'- uCCACGUCC----UGA---ACCGgcGGUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 131483 0.68 0.669405
Target:  5'- gAGGUGgAGGuCggcgGGcCCGCC-GCGCGc -3'
miRNA:   3'- -UCCACgUCCuGaa--CC-GGCGGuUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 102169 0.68 0.669405
Target:  5'- cAGGUcgaaccucGUGGGGCUuuUGGgCGCgAACGCGa -3'
miRNA:   3'- -UCCA--------CGUCCUGA--ACCgGCGgUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 85734 0.68 0.689354
Target:  5'- cGGcGUuGGAgUUGGUCGCCGcCGCGc -3'
miRNA:   3'- uCCaCGuCCUgAACCGGCGGUuGCGC- -5'
7901 3' -58.8 NC_001973.1 + 89287 0.68 0.699264
Target:  5'- -cGUGCAuGACUgacGGCCGC-GACGCGc -3'
miRNA:   3'- ucCACGUcCUGAa--CCGGCGgUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 124767 0.68 0.703214
Target:  5'- cGGUGCGcgcgcgcucuguucGACUaucUGGCCGCCGGCGa- -3'
miRNA:   3'- uCCACGUc-------------CUGA---ACCGGCGGUUGCgc -5'
7901 3' -58.8 NC_001973.1 + 104155 0.67 0.728633
Target:  5'- gAGGcGguGGAUcgGGCCGgCCGaaaACGCa -3'
miRNA:   3'- -UCCaCguCCUGaaCCGGC-GGU---UGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.