miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7901 3' -58.8 NC_001973.1 + 3050 0.66 0.775851
Target:  5'- uGGGUGCgcauuAGcGCUUGGCUGUCGggcaGCGCc -3'
miRNA:   3'- -UCCACG-----UCcUGAACCGGCGGU----UGCGc -5'
7901 3' -58.8 NC_001973.1 + 5151 0.68 0.669405
Target:  5'- uGGUGCAGGcccaGCUgguUGGUguCCGGCGCGa -3'
miRNA:   3'- uCCACGUCC----UGA---ACCGgcGGUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 5737 0.71 0.520177
Target:  5'- uGGUGaCcGGACg-GGCCGCCGAaGCGg -3'
miRNA:   3'- uCCAC-GuCCUGaaCCGGCGGUUgCGC- -5'
7901 3' -58.8 NC_001973.1 + 28151 0.72 0.436781
Target:  5'- ---aGUAGGGCUUGgacgucgcGCCGCCGACGCc -3'
miRNA:   3'- uccaCGUCCUGAAC--------CGGCGGUUGCGc -5'
7901 3' -58.8 NC_001973.1 + 29763 0.69 0.629218
Target:  5'- -uGUGCGaGACgcuccaggcgcUGGCCGUCGACGCGa -3'
miRNA:   3'- ucCACGUcCUGa----------ACCGGCGGUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 30351 0.75 0.323915
Target:  5'- ---cGCAGGcCgaguucgGGCCGCCGGCGCGg -3'
miRNA:   3'- uccaCGUCCuGaa-----CCGGCGGUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 44714 0.66 0.79393
Target:  5'- aAGGUGCcGGGCaaGGUgaaCGUguACGCGg -3'
miRNA:   3'- -UCCACGuCCUGaaCCG---GCGguUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 50183 0.69 0.649338
Target:  5'- uGGcGUGCAcGACUUgcucGGCCGUguACGCGu -3'
miRNA:   3'- -UC-CACGUcCUGAA----CCGGCGguUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 62310 0.66 0.784957
Target:  5'- -cGUGCAGGGCUacuUGGaaGCguaccaAACGCGg -3'
miRNA:   3'- ucCACGUCCUGA---ACCggCGg-----UUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 69692 0.66 0.78586
Target:  5'- -cGUGCAG-ACggucgaugcauucgaUGGCCGCCAcCGCGu -3'
miRNA:   3'- ucCACGUCcUGa--------------ACCGGCGGUuGCGC- -5'
7901 3' -58.8 NC_001973.1 + 80995 0.67 0.766621
Target:  5'- uAGGUGCacgauugccGGGucgagcacaGCUUGaCCGCCGACgGCGg -3'
miRNA:   3'- -UCCACG---------UCC---------UGAACcGGCGGUUG-CGC- -5'
7901 3' -58.8 NC_001973.1 + 81101 0.66 0.800127
Target:  5'- uGGGcGCGGGcucguugaaggcgcGCUUGcGCC-CCGACGUGa -3'
miRNA:   3'- -UCCaCGUCC--------------UGAAC-CGGcGGUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 81618 0.66 0.802761
Target:  5'- cAGGUcguaGCGGGcgauCUUGGUCGC--GCGCGc -3'
miRNA:   3'- -UCCA----CGUCCu---GAACCGGCGguUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 85734 0.68 0.689354
Target:  5'- cGGcGUuGGAgUUGGUCGCCGcCGCGc -3'
miRNA:   3'- uCCaCGuCCUgAACCGGCGGUuGCGC- -5'
7901 3' -58.8 NC_001973.1 + 89287 0.68 0.699264
Target:  5'- -cGUGCAuGACUgacGGCCGC-GACGCGc -3'
miRNA:   3'- ucCACGUcCUGAa--CCGGCGgUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 89584 0.66 0.811444
Target:  5'- cGGUuCAGcGGCgUGGUCGCCAcguacACGUGg -3'
miRNA:   3'- uCCAcGUC-CUGaACCGGCGGU-----UGCGC- -5'
7901 3' -58.8 NC_001973.1 + 94710 0.7 0.579081
Target:  5'- cAGGUGUggguGGGCgaGGCgGCCGgcaaGCGCGc -3'
miRNA:   3'- -UCCACGu---CCUGaaCCGgCGGU----UGCGC- -5'
7901 3' -58.8 NC_001973.1 + 95852 0.66 0.811444
Target:  5'- cGGUGCcgggcacgugggAGGACggcgUGGUCGaCUAcCGCGa -3'
miRNA:   3'- uCCACG------------UCCUGa---ACCGGC-GGUuGCGC- -5'
7901 3' -58.8 NC_001973.1 + 96754 0.71 0.520177
Target:  5'- cGGaGCGccggcgagucGGGCggcgUGGCgGCCAACGCGg -3'
miRNA:   3'- uCCaCGU----------CCUGa---ACCGgCGGUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 96863 0.7 0.539587
Target:  5'- -cGUGCAGGAaaacguggUGGCCGCgGaucuguGCGCGg -3'
miRNA:   3'- ucCACGUCCUga------ACCGGCGgU------UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.